| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,388,584 – 2,388,676 |
| Length | 92 |
| Max. P | 0.708722 |
| Location | 2,388,584 – 2,388,676 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.43 |
| Shannon entropy | 0.36395 |
| G+C content | 0.47042 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.24 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2388584 92 - 23011544 -----------CCUCGAUUUCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCGGCAACAACAA-- -----------..........(((((((((....((((.((((.------(((((.(((((....)).))).))))).))))((.......))))))..))))))))).-- ( -30.10, z-score = -2.86, R) >droPer1.super_10 649441 94 - 3432795 -----------CCCCGAAGGCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGGUGCUGACUCUGUCGUGUGGCAAAAAGGGAC -----------.(((........((((..((....(((.(((.(------.((((.((((((.........)))))).))))..).))).)))..))..))))...))).. ( -27.80, z-score = -1.09, R) >dp4.chr4_group4 1645694 94 - 6586962 -----------CCCCGAAGGCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGGUGCUGACUCUGUCGUGUGGCAAAAAGGGAC -----------.(((........((((..((....(((.(((.(------.((((.((((((.........)))))).))))..).))).)))..))..))))...))).. ( -27.80, z-score = -1.09, R) >droAna3.scaffold_12916 9550425 102 - 16180835 CCUCGUCCUACCGUCCUUUGCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUUCUGACUUUGCUCUG-GGCCGCAACAA-- .................((((.(((...((((((((..(((((.------(((((.(((((....)).))).))))).))))).))).)))))....-))).))))...-- ( -24.70, z-score = -0.82, R) >droYak2.chr2L 2373265 89 - 22324452 -----------CCUCGAUUUCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCGGCAAAAU----- -----------..........((((((.((((((((...((((.------(((((.(((((....)).))).))))).))))..))).)))))...))))))....----- ( -25.80, z-score = -2.17, R) >droEre2.scaffold_4929 2430274 88 - 26641161 -----------CCCCGAUUUCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCCGCAAAA------ -----------..........(((.((.((((((((...((((.------(((((.(((((....)).))).))))).))))..))).)))))...)).)))...------ ( -22.80, z-score = -1.81, R) >droSec1.super_5 561981 92 - 5866729 -----------CCUCGAUUUCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCGGCAAGAAAAA-- -----------......((((((((((.((((((((...((((.------(((((.(((((....)).))).))))).))))..))).)))))...))))).)))))..-- ( -28.50, z-score = -2.77, R) >droSim1.chr2L 2347623 92 - 22036055 -----------CCUCGAUUUCUGUUGUUGUAAAUCACAAAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCGGCAAGAAAAA-- -----------......((((((((((.((((((((...((((.------(((((.(((((....)).))).))))).))))..))).)))))...))))).)))))..-- ( -28.50, z-score = -2.77, R) >droWil1.scaffold_180703 1069785 92 + 3946847 -----------CCCCAAAGGCUGUUGUUGAAAAUCACAGAGUGAAACCGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUACUGACUUUG-UGU--GGUAGGAC----- -----------(((((..(((....)))......((((((((.(...((.(((((.(((((....)).))).))))).))....).))))))-)))--))..))..----- ( -23.40, z-score = -0.73, R) >droVir3.scaffold_12963 9718606 82 - 20206255 ---------------UCCGUCUGUUGUUGUAAAUCACAGAGUGA------AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GGCAAAA------ ---------------......(((..(.(((((...(((((((.------(((((.(((((....)).))).))))).)))).)))..))))).).--.)))...------ ( -25.40, z-score = -2.18, R) >droMoj3.scaffold_6500 30814315 98 + 32352404 -----------UCCCUUCAGCUGUUGUUGUAAAUCACGAACUGAAACCGUAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GGUAAGACCGAGA -----------..((..((((....((((((..(((.....)))...((((((((.(((((....)).))).)))))))).))).)))...)))).--))........... ( -25.00, z-score = -1.00, R) >consensus ___________CCCCGAUUUCUGUUGUUGUAAAUCACAAAGUGA______AACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGUGCGGCAAAAA__A__ ..........................((((....((((((((.(......(((((.(((((....)).))).))))).......).)))))).))....))))........ (-16.00 = -16.24 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:06 2011