| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,727,225 – 4,727,368 |
| Length | 143 |
| Max. P | 0.600340 |
| Location | 4,727,225 – 4,727,368 |
|---|---|
| Length | 143 |
| Sequences | 6 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 87.67 |
| Shannon entropy | 0.23551 |
| G+C content | 0.39938 |
| Mean single sequence MFE | -40.19 |
| Consensus MFE | -25.30 |
| Energy contribution | -26.80 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4727225 143 - 21146708 UUCUGCGCUGCCGAUGCUUCAAUUUGCAUUUUUUUUGAUUGACCAACAUUCGGCUGCGUUUGGUUGGGUUUUAAUUCAUUAAACAUAUGCCCAACCAAUCCGGAGUCUAUACAC----UUUUGUGGGGGCACUCAUAGGGAAAAAAU ....((((.(((((((..((((((............))))))....)).))))).))))(((((((((((((((....))))).....))))))))))(((.((((((...(((----....)))..)).))))...)))....... ( -43.60, z-score = -2.75, R) >droAna3.scaffold_13266 18593382 141 + 19884421 -UGUGUGAGGUUUCUGCCUCAAUUUGCAUUUUUUAUGAUUUACCAUAGCUCACC-----CUGGUUGUAUUUUAAUUCAUUAAACAUAUGUAUGUACAAUUGGAAAUCUAUACACACUUUUCUGUGUGCGCAUUCGUAGGGAAAAAAU -(((.((((((....))))))....)))((((((((((......((((......-----(..(((((((.......(((.......)))...)))))))..)....)))).(((((......))))).....))))))))))..... ( -30.00, z-score = -0.86, R) >droEre2.scaffold_4929 8717406 143 + 26641161 UUCUGGGCUGCCGAUGCUUCAAUUUGCAUUUUUUAUGAUCGACCAACAUUCAACGGCGUUUGGUUGCGUUUUAAUUCAUUAAACAUAUGCCCAACCCAUCCGGAGUCUAUACAC----UUUUGUGGGGGCACUCAUUGGGAAAAAAU ...(((((.((((((((........))))......(((...........))).))))(((((((.............)))))))....))))).((((....((((((...(((----....)))..)).))))..))))....... ( -37.42, z-score = -1.07, R) >droYak2.chr2L 17385515 143 - 22324452 UUCUGUGCUGCCGAUGCUUCAAUUUGCAUUUUUUAUGAUCGACCAACAUUCGGCUGCGUUUGGUUGGGUUUUAAUUCAUUAAACAUAUGCCCAACCAAUCCGGAGUCUAUACAC----UUUUGUGUGGGCACUCAUAGGGAAAAAAU (((((((.(((((((((........))))).....................((((.((.(((((((((((((((....))))).....))))))))))..)).))))..(((((----....)))))))))..)))))))....... ( -42.90, z-score = -2.85, R) >droSec1.super_1 2365029 143 - 14215200 UUCUGCGCUGCCGAUGCUUCAAUUUGCAUUUUUUAUGAUUGACCAACAUUCGGCUGCGUUUGGUUGGGUUUUAAUUCAUUAAACAUAUGCCCAACCAAUCCGGAGUCUAUACAC----UUUUGUGGGGGCACUCAUAGGGAAAAAAU ....((((.(((((((..((((((............))))))....)).))))).))))(((((((((((((((....))))).....))))))))))(((.((((((...(((----....)))..)).))))...)))....... ( -43.60, z-score = -2.75, R) >droSim1.chr2R 3404111 143 - 19596830 UUCUGCGCUGCCGAUGCUUCAAUUUGCAUUUUUUAUGAUUGACCAACAUUCGGCUGCGUUUGGUUGGGUUUUAAUUCAUUAAACAUAUGCCCAACCAAUCCGGAGUCUAUACAC----UUUUGUGGGGGCACUCAUAGGGAAAAAAU ....((((.(((((((..((((((............))))))....)).))))).))))(((((((((((((((....))))).....))))))))))(((.((((((...(((----....)))..)).))))...)))....... ( -43.60, z-score = -2.75, R) >consensus UUCUGCGCUGCCGAUGCUUCAAUUUGCAUUUUUUAUGAUUGACCAACAUUCGGCUGCGUUUGGUUGGGUUUUAAUUCAUUAAACAUAUGCCCAACCAAUCCGGAGUCUAUACAC____UUUUGUGGGGGCACUCAUAGGGAAAAAAU ....((((.((((((((........))).......((......))....))))).))))(((((((((((((((....))))).....))))))))))(((.((((((...(((........)))..)).))))...)))....... (-25.30 = -26.80 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:09:01 2011