| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,721,694 – 4,721,802 |
| Length | 108 |
| Max. P | 0.897754 |
| Location | 4,721,694 – 4,721,802 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 67.53 |
| Shannon entropy | 0.59455 |
| G+C content | 0.44463 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -15.36 |
| Energy contribution | -17.84 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4721694 108 + 21146708 AAUAUUUGUGCGCAUAAG-AGCAAUAGUUAUAAUCUGAGUGUGCUGCCAUUAUUGCCCCAUUGACCAAGACAGGGUUAAAUGGGAAGCUGUUGUCGGAGCUGCGGAACC .....((.(((((....(-(.((((((((........((((......)))).....((((((((((.......)))).)))))).))))))))))...)).))).)).. ( -25.90, z-score = 0.46, R) >droSim1.chr2R 3398265 108 + 19596830 AAUAUUUGCUUGCCUAAG-AGAAAUAGUUAUCAUCUGAGUGUGCUGCCAUUAUUGCCCCAUCGACCAAGAUGGGGUUAAAUGGGAAGCUGUUGUCGGAGCUGCGGAACC ....(((((..((.....-.((........)).(((((....(((.(((((...((((((((......))))))))..)))))..))).....))))))).)))))... ( -33.90, z-score = -1.98, R) >droSec1.super_1 2359439 108 + 14215200 AAUAUUUGUGUGCCUAGG-AGAAAUAGUUAUCAUCUGAGUGUGCUGCCAUUAUUGCCCCAUCGACCAAGAUGGGGUUAAAUGGGAAGCUGUUGUCGGAGCUGCGGAACC ....((((((.(((((..-.....)))......(((((....(((.(((((...((((((((......))))))))..)))))..))).....)))))))))))))... ( -32.70, z-score = -1.38, R) >droYak2.chr2L 17379970 95 + 22324452 -------------GAACA-UUAUAUUAUUAUUAUCUGAGUGUGCUGCCAUUAUUGCCCCAUCGACCAAGAUGGGGUUAAAUGGGAAGCUAUAGUCGGAGCUGCGGAACC -------------.....-..............(((((.((((((.(((((...((((((((......))))))))..)))))..))).))).)))))........... ( -33.10, z-score = -3.34, R) >droAna3.scaffold_13266 18587355 102 - 19884421 AAGCUUAGAUCUCAUAAAUAGAAGUAUUUACCCACUAGGUUCAUGUCUA-----GGUGCAUCCCCUAAAUGGGGGCUUAUAGCCAUUCCAUGA--GAAUUCGUUGAAUU .........((((((...((((.......(((.....))).....))))-----(((....(((((....)))))......))).....))))--))............ ( -22.10, z-score = -0.10, R) >consensus AAUAUUUGUGCGCAUAAG_AGAAAUAGUUAUCAUCUGAGUGUGCUGCCAUUAUUGCCCCAUCGACCAAGAUGGGGUUAAAUGGGAAGCUGUUGUCGGAGCUGCGGAACC .................................(((((....(((.(((((...((((((((......))))))))..)))))..))).....)))))........... (-15.36 = -17.84 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:59 2011