| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,706,444 – 4,706,543 |
| Length | 99 |
| Max. P | 0.921274 |
| Location | 4,706,444 – 4,706,543 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 63.31 |
| Shannon entropy | 0.64928 |
| G+C content | 0.37976 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -9.08 |
| Energy contribution | -10.60 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.921274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4706444 99 - 21146708 GAUAUUGGAUAUGUAACCAUGUCUGUCAUGGAUUAGUAUGCCUAAGGUGUCUGAAAUGA-AAGGCAUCUUGGGCUAAGCUUUUUCUCC-GUGUAGGCAGGU---- ...............(((.((((((.((((((..(((..(((((((((((((.......-.)))))))))))))...))).....)))-))))))))))))---- ( -39.70, z-score = -5.13, R) >droAna3.scaffold_13266 18572129 104 + 19884421 -AACUUUAUUAAUUUACCAACUUAUUGAAGUUUUAAAAUCGUAUUCGUAUUUUAUAGAACAAUGUUUCACAAUUUCAGGAAUCUCGACUGUGCUGUGUGGUAUUU -.............(((((...(((((...((.((((((((....)).)))))).))..)))))...((((....(((.........)))...)))))))))... ( -14.30, z-score = 0.24, R) >droYak2.chr2L 17364521 98 - 22324452 GUCUGUAGUUACGCCAUAAAUUUUGUCAUAAAUUAGGAAUCUUGAGGGGACU-AAACGA-AAGACAUCGUAGUCUAAACUUUUUCUAG-GUGUAGGCAGGU---- .(((((...((((((...(((((......))))).((((....(((.(((((-..((((-......)))))))))...))).)))).)-))))).))))).---- ( -24.90, z-score = -2.02, R) >droSec1.super_1 2344271 99 - 14215200 AUUAUUGGAUAUGUAACCAUGUCUGUCAUGAAUUGGUAUGCCUAAGGUGGCUGAAAUGA-AAGACAUCUUGGUCUAAGCUUUUUCUCC-GUGUAGGCAGGU---- ...............(((.((((((.((((((..(((..(.((((((((.((.......-.)).)))))))).)...)))..)))...-))))))))))))---- ( -24.30, z-score = -0.66, R) >droSim1.chr2R 3383080 99 - 19596830 CUUAUUGGAUAUGUAACCAUGUCUGUCAUGGAUUAGUAUGCCUAAGGUGGUUGGAGUGA-AAAUCAUCUUGGUCUAAGCUUUUUCUCC-GUGUAGGCAGGU---- ...............(((.((((((.((((((..(((..(.(((((((((((.......-.))))))))))).)...))).....)))-))))))))))))---- ( -30.30, z-score = -2.66, R) >consensus GUUAUUGGAUAUGUAACCAUGUCUGUCAUGAAUUAGUAUGCCUAAGGUGGCUGAAAUGA_AAGACAUCUUGGUCUAAGCUUUUUCUCC_GUGUAGGCAGGU____ ...............(((.((((((.((((((..(((....(((((((((((.........))))))))))).....)))..)))....)))))))))))).... ( -9.08 = -10.60 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:58 2011