| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,695,152 – 4,695,259 |
| Length | 107 |
| Max. P | 0.760626 |
| Location | 4,695,152 – 4,695,259 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 74.80 |
| Shannon entropy | 0.44570 |
| G+C content | 0.45716 |
| Mean single sequence MFE | -32.31 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.47 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4695152 107 - 21146708 AUUCUGCGCCACU-CCUGAAAUU-----CGACCCACAACCAGAAAGUAUAUUCAACGUUGGUGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGUGCGAUGGUUGGGU-------- ....(((((((((-...((((..-----.......(((((((((......)))..((((((.......))))))...)))))).......)))))))))))))..........-------- ( -29.49, z-score = -0.66, R) >droSim1.chr2R 3376830 107 - 19596830 AUUCUGCGCCACU-CCUGAAAUU-----CGACCCACGACCAGAAAGUAUAUUCAACGUUGGGGCUUUCCCAACGAAUUGGUUGAUUACUUUUUCGGUGGUGCGAUGGUUGGGU-------- .............-......(((-----((((((((.(((((((((((...(((((((((((.....))))))......))))).)))))))).))).)))....))))))))-------- ( -34.10, z-score = -1.61, R) >droSec1.super_1 2333065 112 - 14215200 AUUCUGCGCCACU-CCUGAAAUUCGACCCGACCCACGACCAGAAAGUAUAUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGUGCGAUGGUUGGGU-------- .............-...........(((((((((((.(((((((((((...(((((((((((.....))))))......))))).)))))))).))).)))....))))))))-------- ( -39.60, z-score = -2.37, R) >droYak2.chr2L 17353500 112 - 22324452 AUUCUACGUCACU-CCUAAAAUU-----CGACCUACAACCAGAAAGU--AUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGUG-GGUGGUGCAGUGAUUGGGU ..((((.((((((-.(.......-----(.((((((.((((((((((--(.(((((((((((.....))))))......))))).)))))))).))).)))-))).).).)))))))))). ( -40.10, z-score = -3.17, R) >droEre2.scaffold_4929 8686952 100 + 26641161 AUUCUGCGCCACU-CCUGAAAUU-----CGACCGACAACUGGAAAGU--AUUCAACGUUGGGGCUUCACCAGCGAAUCGGUUGAUUACUUUUUCGGUGGUU-GGUGGUG------------ ......((((((.-.((((((.(-----(((((((..(((....)))--......((((((.......))))))..))))))))......))))))..).)-))))...------------ ( -36.00, z-score = -3.00, R) >droAna3.scaffold_13266 18559259 82 + 19884421 UUUCCAUGUCACUGCCUGACAU------CCAC--ACUGACAAAAA-------CAAC--UGCAUCU----------AUUUGUUGAUUACAUUUAUUUUUGUG-GAUGUUUG----------- .................(((((------((((--(..((.(((..-------....--.(((...----------...)))........))).))..))))-))))))..----------- ( -14.56, z-score = -1.25, R) >consensus AUUCUGCGCCACU_CCUGAAAUU_____CGACCCACAACCAGAAAGU__AUUCAACGUUGGGGCUUUCCCAGCGAAUUGGUUGAUUACUUUUUCGGUGGUG_GAUGGUUGGGU________ ...............................(.(((.((((((((((....((((((((((.......)))))......)))))..))))))).))).))).).................. (-14.90 = -15.47 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:56 2011