| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,692,656 – 4,692,711 |
| Length | 55 |
| Max. P | 0.981196 |
| Location | 4,692,656 – 4,692,711 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 81.64 |
| Shannon entropy | 0.33465 |
| G+C content | 0.44525 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -7.30 |
| Energy contribution | -9.14 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4692656 55 + 21146708 AAACAAUGGAAGAGUGUUCAACCCGAAAACGGGAGUGUGAAUACCCUUCGAAUGC ...((.(.((((.(((((((.((((....))))....))))))).)))).).)). ( -19.00, z-score = -4.13, R) >droSim1.chr2R 3374337 55 + 19596830 AAACAAUGGAAGAGUGUUCAACCCGCAAACGGGAGUGUGAAUACCCUUCGAAUGC ...((.(.((((.(((((((.((((....))))....))))))).)))).).)). ( -19.00, z-score = -3.76, R) >droSec1.super_1 2330563 55 + 14215200 AAACAAUGGAAGAGUGUUCAACACGCAAACGGGAGUGUGAAUACCCUUCGAAUGC ...((.(.((((.(((((((.(((.(......).)))))))))).)))).).)). ( -16.20, z-score = -2.71, R) >droEre2.scaffold_4929 8684550 54 - 26641161 AAACAAUGGAAGAGUGUUCAGCCCG-AAAGGGGAAUGUAAAUACCCUCCAAAUGC ......((((.(.(((((((.(((.-...)))...))..)))))).))))..... ( -15.00, z-score = -2.55, R) >droAna3.scaffold_13266 18556865 55 - 19884421 AAACAAUGCACGAAUGCUAAGCUGCGAUUGAGAAGUGUAAAUACCCUUACAAAGC .......((.(((.(((......))).))).....(((((......)))))..)) ( -6.80, z-score = -0.01, R) >consensus AAACAAUGGAAGAGUGUUCAACCCGCAAACGGGAGUGUGAAUACCCUUCGAAUGC ........((((.(((((((.((((....))))....))))))).))))...... ( -7.30 = -9.14 + 1.84)
| Location | 4,692,656 – 4,692,711 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 81.64 |
| Shannon entropy | 0.33465 |
| G+C content | 0.44525 |
| Mean single sequence MFE | -14.60 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.981196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4692656 55 - 21146708 GCAUUCGAAGGGUAUUCACACUCCCGUUUUCGGGUUGAACACUCUUCCAUUGUUU (((...(((((((.((((....((((....)))).)))).)))))))...))).. ( -18.70, z-score = -4.22, R) >droSim1.chr2R 3374337 55 - 19596830 GCAUUCGAAGGGUAUUCACACUCCCGUUUGCGGGUUGAACACUCUUCCAUUGUUU (((...(((((((.((((....((((....)))).)))).)))))))...))).. ( -19.40, z-score = -3.92, R) >droSec1.super_1 2330563 55 - 14215200 GCAUUCGAAGGGUAUUCACACUCCCGUUUGCGUGUUGAACACUCUUCCAUUGUUU (((...(((((((.(((((((.(......).))).)))).)))))))...))).. ( -15.20, z-score = -2.75, R) >droEre2.scaffold_4929 8684550 54 + 26641161 GCAUUUGGAGGGUAUUUACAUUCCCCUUU-CGGGCUGAACACUCUUCCAUUGUUU (((..((((((((.((((....(((....-.))).)))).)).)))))).))).. ( -13.10, z-score = -1.39, R) >droAna3.scaffold_13266 18556865 55 + 19884421 GCUUUGUAAGGGUAUUUACACUUCUCAAUCGCAGCUUAGCAUUCGUGCAUUGUUU ((.(((..(((((....)).)))..)))..))......(((....)))....... ( -6.60, z-score = 0.79, R) >consensus GCAUUCGAAGGGUAUUCACACUCCCGUUUGCGGGUUGAACACUCUUCCAUUGUUU (((...(((((((.((((....((((....)))).)))).)))))))...))).. (-11.12 = -11.20 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:55 2011