Locus 3368

Sequence ID dm3.chr2R
Location 4,671,719 – 4,671,827
Length 108
Max. P 0.942633
window4630

overview

Window 0

Location 4,671,719 – 4,671,827
Length 108
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 88.25
Shannon entropy 0.16129
G+C content 0.35398
Mean single sequence MFE -25.90
Consensus MFE -23.35
Energy contribution -23.13
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.48
SVM RNA-class probability 0.942633
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 4671719 108 - 21146708
UGUGGUGCAAGCUAUCCCAAAAUAACUUGGCAGAGCCA--UUGCAUUUUGGAAGGAAGUGAUAAAUACCACCUAAUUUAUUGGUAUUUAAUUCAUUUGGAAACAAAAACU--------
((..(((...(((...((((......))))...)))))--)..))(((((.....(((((((((((((((..........)))))))))..)))))).....)))))...-------- ( -25.40, z-score =  -1.49, R)
>droSec1.super_1 2309806 113 - 14215200
---GGUGCAAGCUAACCCAAAAUAACUUGGCAGAGCCA--UUGCAUUUUGGAAGGAAGUGAUAAAUACCACCUAAUUUAUUGGUAUUUAAUUCAUUUGGAAACGAAAACAGCAGAACA
---.......(((...(((((((....((((...))))--....)))))))....(((((((((((((((..........)))))))))..))))))(....)......)))...... ( -26.10, z-score =  -1.81, R)
>droSim1.chr2R 3353240 115 - 19596830
---GGUGCAAGCUAACCCAAAAUAACUUGGCAGAGCAAUUUUGCAUUUUGAAAGGAAGUGAUAAAUACCACCUAAUUUAUUGGUAUUUAAUUCAUUUCGAAACGAACACAGCAGAACG
---.......(((...((((......))))...)))..((((((..((((....((((((((((((((((..........)))))))))..)))))))....))))....)))))).. ( -26.20, z-score =  -2.70, R)
>consensus
___GGUGCAAGCUAACCCAAAAUAACUUGGCAGAGCCA__UUGCAUUUUGGAAGGAAGUGAUAAAUACCACCUAAUUUAUUGGUAUUUAAUUCAUUUGGAAACGAAAACAGCAGAAC_
....(((((((((...((((......))))...)))....))))))((((.....(((((((((((((((..........)))))))))..)))))).....))))............ (-23.35 = -23.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:51 2011