| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,658,695 – 4,658,796 |
| Length | 101 |
| Max. P | 0.624174 |
| Location | 4,658,695 – 4,658,796 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.97 |
| Shannon entropy | 0.62796 |
| G+C content | 0.44512 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -9.06 |
| Energy contribution | -9.10 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4658695 101 - 21146708 GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCGAA-CAACCUAAAAUUAAUUACACCCACUUCGCCCCGGGCAGGAG-CCCCCGCCUCAC--- (.(((.(...((.((((((.(((((((......)))))))...(((((-........................)))))...))))))..)-)..).))).)..--- ( -23.66, z-score = -0.25, R) >droSim1.chr2R_random 1597233 87 - 2996586 GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCAAA-CAACCUAAAAUUAAUUACACCUACACCGCCCCGCCUCAC------------------ (.(((.....(((.(((........))).)))(((((((((((.....-........))))))))...........)))..))).)..------------------ ( -15.12, z-score = -0.52, R) >droSec1.super_1 2302891 102 - 14215200 GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCAAA-CAACCUAAAAUUAAUUACACCUACUCCGCCCCAGGCAGCAGCCCCCCGCCUCAC--- ..(((((......((((...(((((((......)))))))...)))).-...........................(((...)))..)))))...........--- ( -22.10, z-score = -0.72, R) >droYak2.chr2L 17322439 102 - 22324452 GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCAAA-CAACCUAAAAUUAAUUACACCUACUCCGCCCCGGGCAGCUGCCCCCCCUCCCCC--- (..((((......((((...(((((((......)))))))...)))).-........................((((...))))))))..)............--- ( -21.80, z-score = -0.68, R) >droEre2.scaffold_4929 8657113 103 + 26641161 GCGGCUGAGAGCAUUGCUCAUAAUUGCAUUGCGCCAAUUAAUUGCAAA-CAACCUAAAAUUAAUUACACCUACUCCGCCCCAGGCAGCUGCCCCCCUCCCCCUC-- (((((((((.(((.(((........))).)))...((((((((.....-........)))))))).......))).(((...))))))))).............-- ( -24.72, z-score = -2.93, R) >droAna3.scaffold_13266 18522531 81 + 19884421 GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCAAA-CAACGUAAAAUUAAUUACACCUACCCCGCCCCC------------------------ ..(((........((((...(((((((......)))))))...)))).-....((((......)))).........)))...------------------------ ( -16.40, z-score = -1.14, R) >dp4.chr3 13808635 100 - 19779522 GGGACUGAAAGGAUUGCUCAUAAUUGCAUUUGAGAAAUUAAUUGCAAAGCAGCCCAAAAUUAAUUACACCU-CUGUCUCUCUGCCACACACUCACACACUC----- (((((.((..((..((((.....(((((.((((....)))).)))))))))..))((......)).....)-).)))))......................----- ( -18.90, z-score = -1.20, R) >droPer1.super_4 5651375 100 + 7162766 GGGACUGAAAGGAUUGCUCAUAAUUGCAUUUGAGAAAUUAAUUGCAAAGCAGCCCAAAAUUAAUUACACCU-CUGUCUCUCUGCCACACACUCACACACUC----- (((((.((..((..((((.....(((((.((((....)))).)))))))))..))((......)).....)-).)))))......................----- ( -18.90, z-score = -1.20, R) >droWil1.scaffold_180697 1303219 94 + 4168966 ------------ACUGCUCAUAAUUGCAUUAUGGCAAUUAAUUGCAGCAUAACCCGAAAUUAAUUUCACAUAUUGUAGUCGUAGUUGUAGUUGUUGCUUGUCCCUU ------------..(((........)))....((((((.(((((((((.......((((....))))((.....)).......)))))))))))))))........ ( -17.70, z-score = -0.53, R) >consensus GUGGCUGAAAGCAUUGCUCAUAAUUGCAUUGUGGCAAUUAAUUGCAAA_CAACCUAAAAUUAAUUACACCUACUCCGCCCCGGGCAGCAGCCCCCCCCCUC_____ .............((((...(((((((......)))))))...))))........................................................... ( -9.06 = -9.10 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:50 2011