| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,643,220 – 4,643,319 |
| Length | 99 |
| Max. P | 0.646742 |
| Location | 4,643,220 – 4,643,319 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.66 |
| Shannon entropy | 0.56548 |
| G+C content | 0.41107 |
| Mean single sequence MFE | -21.16 |
| Consensus MFE | -10.39 |
| Energy contribution | -9.81 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4643220 99 + 21146708 GUAUAAAUUU-CGAGCAAGAACAAAAGCGUCGAGGGUCGAGCAUCGGGAAAGAUACAUAUAUA------UAUAUGUGUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ((((...(..-((((......)....((.(((.....))))).)))..)...)))).......------....((..((((((...((....))))))))..)).. ( -19.50, z-score = -1.82, R) >droSim1.chr2R 3331036 105 + 19596830 GUAUAAAUUU-CGAGCAAGAACAAAAGCGUCGAGGGUCGAGCUUCGGGAAUGAUACAUAUAUACAUAUAUAUAUGUGUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ((((...(((-(.........(..((((.(((.....)))))))..).....(((((((((((......))))))))))).))))(((((....)))))))))... ( -23.00, z-score = -2.07, R) >droSec1.super_1 2287509 97 + 14215200 GUAUAAAUUU-CGAGCAAGAACAAAAGCGUCGAGGGUCGAGCUUCGGGAAAGAUACAUAUAUA------UAU--GUGUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ((((...(((-(..((..........)).((((((......)))))))))).)))).......------..(--(..((((((...((....))))))))..)).. ( -20.20, z-score = -1.86, R) >droYak2.chr2L 17306830 95 + 22324452 GUAUAAAUUU-CGAGUAAGAACAAAAGCGUUGAGGGCCGAGCUUUGGGAAAGAUACAUACAUA----------UAUAUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ((((...(((-(..((....)).(((((.(((.....))))))))..)))).)))).......----------..((((((((...((....)))))))))).... ( -14.60, z-score = -0.59, R) >droEre2.scaffold_4929 8642601 75 - 26641161 GUAUAAAUUU-CGAGCAAGAACAAAAGCGUCGAGGGUCGAGCUC------------------------------GUAUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ..........-.((((..(........).(((.....)))))))------------------------------(((((((((...((....)))))))))))... ( -16.00, z-score = -1.79, R) >dp4.chr3 13792192 93 + 19779522 GUAUAAAUUUUCGAGCCAGAACAAAAGCGUCAAGAGUGGGGCUUAAAGCCAGAGAUG-GUGC-----------UGGGUGCUGGGUGCUGGGAGGCAGGCAGCCAG- .............(.((((.....((((.(((....))).))))...((((....))-)).)-----------))).).((((.((((........)))).))))- ( -27.40, z-score = 0.08, R) >droPer1.super_4 5634783 93 - 7162766 GUAUAAAUUUUCGAGCCAGAACAAAAGCGUCAAGAGUGGGGCUUAAAGCCAGAGAUG-GUGC-----------UGGGUGCUGGGUGCUGGGAGGCAGGCAGCCAG- .............(.((((.....((((.(((....))).))))...((((....))-)).)-----------))).).((((.((((........)))).))))- ( -27.40, z-score = 0.08, R) >consensus GUAUAAAUUU_CGAGCAAGAACAAAAGCGUCGAGGGUCGAGCUUCGGGAAAGAUACAUAUAUA__________UGUGUAUAGAAAAUAGAAAUAUCUGUGUGCAAG ........................((((.(((.....)))))))..............................((((((((...(((....)))))))))))... (-10.39 = -9.81 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:48 2011