| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,642,375 – 4,642,481 |
| Length | 106 |
| Max. P | 0.579835 |
| Location | 4,642,375 – 4,642,481 |
|---|---|
| Length | 106 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.31 |
| Shannon entropy | 0.56747 |
| G+C content | 0.49494 |
| Mean single sequence MFE | -22.68 |
| Consensus MFE | -12.71 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4642375 106 + 21146708 GAGAUGCGGUCACGCUACCGCGAGCAUCAC------ACCUCCGCACAGGAGACCUCACGCGAACCAAAGGUAAGUUUUAUCAUUAAAUCUUAACAAUAUGACGACAUUAUCU (((.((((((......))))))........------..((((.....))))..)))...........(((((((((...((((..............)))).))).)))))) ( -20.94, z-score = -0.97, R) >droSim1.chr2R 3330203 106 + 19596830 GAGAUGCGGUCACGCUACCGCGAGCAUCAC------ACCUCCGCCCAGGAGACCUCACGCGAACCAAAGGUAAGUUUUAUCUUUAAGUCUUUACAUGAUUACGAAAUUAUCU (((.((((((......))))))........------..((((.....))))..)))...((....(((((((.....))))))).((((.......)))).))......... ( -21.70, z-score = -0.58, R) >droSec1.super_1 2286672 106 + 14215200 GAGAUGCGGUCACGCUACCGCGAGCAUCAC------ACCUCCGCCCAGGAGACCUCACGCGAACCAAAGGUAAGUUUUAUCUUUAAGUCUUUACCAUAUGACGAAAUUAUAU (((.((((((......))))))........------..((((.....))))..)))............((((((.((((....))))..))))))((((((.....)))))) ( -22.10, z-score = -0.90, R) >droYak2.chr2L 17305963 90 + 22324452 GAGAUGCGGUCACGCUACCGCGAGCAUCAC------ACCUCCGCCCAGGAGACCUCACGCGAACCAAAGGUAUGUGUU--CUUUCAAUUUCAGUACCU-------------- ((((((((((......)))))((((((...------..((((.....))))((((............))))..)))))--).....))))).......-------------- ( -23.80, z-score = -1.33, R) >droEre2.scaffold_4929 8641851 83 - 26641161 GAGAUGCGGUCACGCUACCGCGAGCAUCAC------ACAUCCGCCCAGGAGACCUCACGCGAACCAAAGGUAUGUGUUGUUUGUCAAUA----------------------- ..((((((((......)))))(((((.(((------(..(((.....))).((((............)))).)))).))))))))....----------------------- ( -21.80, z-score = -0.26, R) >droWil1.scaffold_180697 1277882 85 - 4168966 GAGAUGCGUUCACGUUAUCGUGAACAUCAU------GCCCUUAACGAAGAGACCUCACGCGAACCAAAGGUAAGUUCAAUCAAUGGAUUUU--------------------- (((((.((((((((....))))))).....------.........(((...((((............))))...))).......).)))))--------------------- ( -16.10, z-score = -0.01, R) >droMoj3.scaffold_6496 12951182 108 - 26866924 GAGAUGCGUUCGCGCUAUCGCGAGCAUCAUCAUCAGACAUCAACCGAGGAGACCUCACGCGAACCAAAGGUAAGCCCCA-CUCUUAAUGGCCAAAUGAUGGCGCUUGCU--- ..((((((....))).)))((((((..((((((..(.(((.....((((...))))..((..(((...)))..))....-......)))..)..))))))..)))))).--- ( -32.30, z-score = -1.27, R) >consensus GAGAUGCGGUCACGCUACCGCGAGCAUCAC______ACCUCCGCCCAGGAGACCUCACGCGAACCAAAGGUAAGUUUUAUCUUUAAAUCUU_ACA__AU__CG_________ (((.((((((......))))))................((((.....))))..)))..((..(((...)))..))..................................... (-12.71 = -13.00 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:48 2011