| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,641,841 – 4,641,949 |
| Length | 108 |
| Max. P | 0.951814 |
| Location | 4,641,841 – 4,641,949 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 71.21 |
| Shannon entropy | 0.62781 |
| G+C content | 0.57872 |
| Mean single sequence MFE | -38.39 |
| Consensus MFE | -19.27 |
| Energy contribution | -18.99 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.951814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4641841 108 + 21146708 CCUAAAUGUUCCUUAUUUAGAUGGCGCAAACGCACUGUCCUCGAUGACAUAAGGGCCUGUGAGUCGUUCCUGCGCAAGGAGCGUCGGGAUAGCGCCCAACAGCGCCAA--- .(((((((.....))))))).((((((........((((......))))...((((((((..(.(((((((.....))))))).)...)))).))))....)))))).--- ( -42.80, z-score = -3.13, R) >droSim1.chr2R 3329669 108 + 19596830 UUUAAAUGUUCCUUAUUUAGAUGGCGCAAACGCACUGUCCUCGAUGACAUAAGGGACUGCGAGUCAUUCCUGCGCAAGGAGCGUCGGGAUAGCGCCCAGCAGCGCCAG--- ((((((((.....))))))))((((((....((.((((((.(((((........(((.....))).(((((.....)))))))))))))))).))......)))))).--- ( -39.10, z-score = -2.14, R) >droSec1.super_1 2286139 107 + 14215200 CCUACAUGUUC-UUAUUUAGAUGGCGCAAACGCACUGUCCUCGAUGACAUAAGGGCCUGCGAGUCGUUCCUGCGCAAGGAGCGUAGGGAUAGCGCCCAGCAGCGACAG--- .(((.(((...-.))).)))..(((((...((((..(((((..........))))).))))....((((((((((.....)))))))))).)))))............--- ( -36.20, z-score = -0.93, R) >droYak2.chr2L 17305401 103 + 22324452 -----AUGCUGCUUAUUUAGAUGGCGUAAACGCACUGCCCUGGAUGACAUAAGGGCCUGCGAGUCCUUCCUGCGCAAGGAGCGUCGGGAUAGUGCCCAACAGCGCCAG--- -----................((((((...((((..(((((..........))))).)))).(..((((((((((.....))).))))).))..)......)))))).--- ( -36.30, z-score = -0.60, R) >droEre2.scaffold_4929 8641316 103 - 26641161 -----AUGCUGCUUGUUUAGAUGGCGCAAACGCACUGUCCUUGAUGACAUAAGGGCCUGCGAGUCAUUCCUGCGCAAGGAGCGCCGGGAUAGCGCCCAACAGCGCCAG--- -----..((((.(((.......(((((...((((..(((((((......))))))).))))....(((((.((((.....)))).))))).)))))))))))).....--- ( -40.51, z-score = -1.50, R) >droAna3.scaffold_13266 18505021 106 - 19884421 -----CAGAGUCCUUUAUAGGUGGCGUAAGCGCACUGUUCAUGAUGACAUGAGGGCCACCGAGUCCUUUUUGCGUAAGGAGCGCCGGGACAGUGCCCAGCAGCAGCGCCAA -----......(((....)))((((((..((((.....(((((....)))))((((.((...(((((....((((.....)))).))))).)))))).)).)).)))))). ( -37.60, z-score = -1.03, R) >dp4.chr3 13790969 103 + 19779522 -----UCCCCCAUUUUCCAGGUGGCGCAAGCGCACGGCCCUCGAUGACAUCCGGUCGUGCGAGUCCUUUCUGCGCAAGGAGCGCCGUGACAGCGCCCAGCAGCGCCAG--- -----....((........))((((((..(((((.((..(((((((((.....))))).))))..))...)))))..((.((((.......))))))....)))))).--- ( -41.40, z-score = -1.64, R) >droPer1.super_4 5633554 103 - 7162766 -----UCCCCCAUUUUCCAGGUGGCGCAAGCGCACGGCCCUCGAUGACAUCCGGUCGUGCGAGUCCUUUCUGCGCAAGGAGCGCCGUGACAGCGCCCAGCAGCGCCAG--- -----....((........))((((((..(((((.((..(((((((((.....))))).))))..))...)))))..((.((((.......))))))....)))))).--- ( -41.40, z-score = -1.64, R) >droWil1.scaffold_180697 1277374 106 - 4168966 -----CGAAUUCAUUUUCAGAUGGCGCAAACGCACUACCCUCGAUGACAUACGGGUGUGUGAGUCUUUUUUGCGUAAAGAACGACGGGAUAGCGCUCAGCAGCAGCGUCAA -----.(((......)))...((((((....((((.((((............))))))))((((((.((((((((.....))).))))).)).)))).......)))))). ( -29.70, z-score = -0.25, R) >droVir3.scaffold_13324 2843735 104 + 2960039 ----UAUAUGUCCAAAACAGAUGGCGCAAGCGCACGGCCCUUGAUGAUAUGAGGGCCUGCGAGUCCUUUUUGCGCAAGGAGCGCCGCGAGAGCGCCCAGCAGCUGCAA--- ----....(((.(((((..(((.((....))(((.(((((((........))))))))))..)))..))))).))).((.(((((....).)))))).((....))..--- ( -43.30, z-score = -2.13, R) >droMoj3.scaffold_6496 12950628 104 - 26866924 ----UUUGCCUUCUGCGUAGAUGGCGCAAGCGCACGGCCCUUGAUGAUAUGAGGGCUUGCGAGUCCUUUUUGCGCAAGGAGCGCCGGGAGAGCGCUCAGCAGCUGCAG--- ----..(((...((((.......(((((((((((.(((((((........))))))))))).......)))))))...(((((((....).)))))).))))..))).--- ( -46.31, z-score = -1.34, R) >anoGam1.chr3L 3553080 93 - 41284009 -----UGAAUGUUCUCCUACCAGGACAAAGUUUACGCUGACGGAGAACGUACGCGCUUGUGAGGACUUCCUGCGCAUGGAGCGAACGCACA-CGAACAG------------ -----...(((((((((...(((.............)))..))))))))).(((.(((((((((....))).)))).)).)))........-.......------------ ( -26.02, z-score = -0.78, R) >consensus _____AUGCUCCUUAUUUAGAUGGCGCAAACGCACUGCCCUCGAUGACAUAAGGGCCUGCGAGUCCUUCCUGCGCAAGGAGCGCCGGGAUAGCGCCCAGCAGCGCCAG___ ......................(((((...(((...((((............))))..))).....((((.((((.....)))).))))..)))))............... (-19.27 = -18.99 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:47 2011