| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,636,873 – 4,636,967 |
| Length | 94 |
| Max. P | 0.734175 |
| Location | 4,636,873 – 4,636,967 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.88 |
| Shannon entropy | 0.41295 |
| G+C content | 0.48708 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -16.48 |
| Energy contribution | -18.35 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4636873 94 - 21146708 -CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGGCUGUCAACAGCCACGGCU-----UUGUAUAGCUUUGGCUGUAGCUGUAGCUAC---------------- -....(((......)))(((((((((....)))))).......((((((....(((((((.((((-----......)))).))))))))))))).)))..---------------- ( -33.00, z-score = -2.49, R) >droSim1.chr2R 3324667 106 - 19596830 -CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGGCUGUCAACAGUCACAGCU-----UUGUAUAGCUUUGGCUGGAGCUGAAGCUGUAGCUGUAGCUAC---- -....(((......)))((.((((((....))))))))....((((((((....)))))((((((-----....(((((((..((....))..))))))))))))).)))..---- ( -40.00, z-score = -2.86, R) >droSec1.super_1 2281171 94 - 14215200 -CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGGCUGUCAACAGUCACAGCU-----UUGUAUAGCUUUGGCUGUAUCUGUAGCUGC---------------- -....(((......)))((.((((((....)))))))).....(((((((.(((((((((.((((-----......)))).)))))))...)))))))))---------------- ( -32.50, z-score = -2.81, R) >droYak2.chr2L 17300480 110 - 22324452 -CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGCCUGUCAACAGCAACAGCU-----UUGUGUAGCUUUAGCUGGAGUUGUAGCUGUGGCUGUAGCUCGCAAC -.......((((.(((.((.((((((....)))))))).......((.((....))))..)))))-----))(((.((((.((((((.(((....))).)))))).)))))))... ( -34.10, z-score = -0.68, R) >droEre2.scaffold_4929 8635754 111 + 26641161 -CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGGCUGUCAACAGCAACAGCUUUGUAUUGUAUAGCUUUAGCUGGAGCUGGAGCUGUAGCUGUAGCUAC---- -((((...((((.(((.((.((((((....))))))))........((((....))))..)))))))..))))..(((((.((((((.(((....))).)))))).))))).---- ( -40.30, z-score = -2.56, R) >droAna3.scaffold_13266 18500107 103 + 19884421 UCGAUUCAAAAGACUGAGGCGACAAACUUGUUUCUGCGCCAAAGCAGCUGUCAACAGAAACCGAA----ACGGCUCAGAAACAGAAACAGCAACAGCUACAGCGACU--------- (((.......((.(((..((.......(((((((((.(((.......(((....)))........----..))).))))))))).....))..)))))....)))..--------- ( -24.13, z-score = -0.91, R) >consensus _CGAUUCAAAAGACUGAGGCGAGAAACUUGUUUCUCCCCCUAAGCGGCUGUCAACAGCAACAGCU_____UUGUAUAGCUUUAGCUGGAGCUGUAGCUGCAGCUGUA_________ .....(((......)))((.((((((....)))))).))....(((((((....((((..(((((.................)))))..)))))))))))................ (-16.48 = -18.35 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:45 2011