| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,631,666 – 4,631,758 |
| Length | 92 |
| Max. P | 0.854179 |
| Location | 4,631,666 – 4,631,758 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 72.89 |
| Shannon entropy | 0.47301 |
| G+C content | 0.63564 |
| Mean single sequence MFE | -39.38 |
| Consensus MFE | -24.62 |
| Energy contribution | -26.14 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4631666 92 + 21146708 GCUCGUUAGAGCGUAAGGCCAGCUCCAAAGUCUGGAACUCGACCAGGACGGGGGGACCAGGACUGCAGUCGGCUCUGGGCUUCGGCCUGGAC------- ((((....)))).....(((((.((((.....)))).)).((((((..(.((....)).)..)))..))))))((..(((....)))..)).------- ( -41.00, z-score = -1.54, R) >droSim1.chr2R 3319502 92 + 19596830 GCUCGUUAGAGCGUAAGGCCAGCUCCAGAGUCUGGAACUCGACCGGGACGGGGGGACCAGGACUGCAGUCGGCUCUGGGUUUCGGCCUGGAC------- ((((....))))((.((((((((.((((((((..(....)((((((..(.((....)).)..)))..))))))))))))))..)))))..))------- ( -41.90, z-score = -1.43, R) >droSec1.super_1 2276040 92 + 14215200 GCUCGUUAGAGCGUAAGGCCAGCUCCAGAGUCUGAAACUCGACCGGGACGGGGGGACCAGGACUGCAGUCGGCUCUGGGUUUCGGCCUGGAC------- ((((....))))((.((((((((.((((((((.(.....)((((((..(.((....)).)..)))..))))))))))))))..)))))..))------- ( -41.90, z-score = -1.72, R) >droYak2.chr2L 17295404 80 + 22324452 GCUCGUUAGAGCGUAAGGCCAGCUUCAGCUCCAGAGUCUGGAACUCGAUCGGGGAUCCAGGACUGGACUUCAGCCUGGAC------------------- ((((....))))......((((((..((.(((((..((((((.(((.....))).)))))).)))))))..)).))))..------------------- ( -31.80, z-score = -1.42, R) >droEre2.scaffold_4929 8630787 93 - 26641161 GCUCGUUAGGGCGCGAGGCCAGCUCCAGCGCC------UGGAACUCGAUCGGGGCACCAGGACUGCAGUCGGCUCUGGGUUUUGGGUUUUGGCCUGGAC ((((....)))).(.(((((((..((...(((------(.((......)).)))).((((..(((....)))..))))......))..))))))).).. ( -40.30, z-score = -0.71, R) >consensus GCUCGUUAGAGCGUAAGGCCAGCUCCAGAGUCUGAAACUCGACCGGGACGGGGGGACCAGGACUGCAGUCGGCUCUGGGUUUCGGCCUGGAC_______ ((((....))))...((((((((.((((((((..................((....))..(((....))))))))))))))..)))))........... (-24.62 = -26.14 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:43 2011