| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,612,461 – 4,612,552 |
| Length | 91 |
| Max. P | 0.852513 |
| Location | 4,612,461 – 4,612,552 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 75.25 |
| Shannon entropy | 0.51365 |
| G+C content | 0.52718 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -16.44 |
| Energy contribution | -15.99 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4612461 91 + 21146708 -------CAGUGCGCGAGUUCGAG--UUCGAGUC--UCCGCCCAUGCUUGUUGGCUUCUUCCGACGAUCA--CCCACGUUAUUUAGCCGUUAACUCCUUGGGCU -------......(.(((((((..--..)))).)--)))(((((.....((((((..((...((((....--....))))....))..))))))....))))). ( -24.00, z-score = -0.37, R) >droMoj3.scaffold_6496 12908903 98 - 26866924 CUGC-UAAGCAGCGCGAGUUCGAAU-CCCGUUCCGGUCCGCCCGAUCUUGUUGGCUUCUUU-GACGAUAA--CUCACGUUAUUUGGCCGU-AACUCAUCGGGCA ((((-...))))..((.(..((...-..))..)))....(((((((.....(((((....(-((((....--....)))))...))))).-.....))))))). ( -28.50, z-score = -0.58, R) >droVir3.scaffold_13324 2812040 94 + 2960039 CCGUGCGUUUAGUGCGAGUUCGAAU-CUCGCUC-----CGCCCGAGCUUGUUGGCUUCUUU-GACGACAA--CUCACGUUACUUGGCCGU-AACUACUCGGGCU ...........(.(((((.......-))))).)-----.(((((((.....(((((....(-((((....--....)))))...))))).-.....))))))). ( -31.70, z-score = -1.71, R) >droWil1.scaffold_180697 1233899 91 - 4168966 -------AAUGGCAC-AUUGCGUGAGUUCAAAUC--CCCGCCCGAACUUGUUGGCUU--UUAGACGAUAAACCCCACGCUAAUUAGCCGU-AACUCCUUGGGCA -------...((...-...((....))......)--)..((((((......(((((.--((((.((..........))))))..))))).-......)))))). ( -22.62, z-score = -1.04, R) >droPer1.super_4 5601977 89 - 7162766 --------UUCUCACUCGUUCGUGUGUUCGAAUC---CCGCCCGAGCUUGUUGGCUUCUUC-GACGAAAA--CUCACGUUAAUUAGCCGUUA-CUCCUUGGGCU --------.........(((((......))))).---..(((((((.....(((((...(.-.(((....--....)))..)..)))))...-...))))))). ( -24.80, z-score = -2.01, R) >dp4.chr3 13760047 89 + 19779522 --------CUCUCACUCGUUCGUGUGUUCGAAUC---CCGCCCGAGCUUGUUGGCUUCUUC-GACGAAAA--CUCACGUUAAUUAGCCGUUA-CUCCUUGGGCU --------.........(((((......))))).---..(((((((.....(((((...(.-.(((....--....)))..)..)))))...-...))))))). ( -24.80, z-score = -2.08, R) >droAna3.scaffold_13266 18474883 88 - 19884421 ----------UGU-UGAGUCGUGAG-UUCGAAUC--UCCGCCCAUGCUUGUUGGCUUCUUUCGACGAUUA--CCCACGUUAUUUAGCCGUUAACUCCUUGGGCA ----------..(-((((.(....)-)))))...--...(((((.....((((((..((...((((....--....))))....))..))))))....))))). ( -22.40, z-score = -1.25, R) >droEre2.scaffold_4929 8611635 92 - 26641161 -------CCGUGCGCGAGUUCGAGG-UUCGAUUC--UCGGCCCAUGCUUGUUGGCUUCUUUCGACGAUCA--CCCACGUUAUUUAGCCGUUAACUCCUUGGGCA -------.......((((.(((...-..)))..)--)))(((((.....((((((..((...((((....--....))))....))..))))))....))))). ( -25.30, z-score = -0.22, R) >droYak2.chr2L 17275857 85 + 22324452 -------CCGUGCGCGAGUUCGAG--------UC--UCCGCCCAUGCUUGUUGGCUUCUUUCGACGAUCA--CCUACGUUAUUUAGCCGUUAACUCCUUGGGCA -------.((.((....)).))..--------..--...(((((.....((((((..((...((((....--....))))....))..))))))....))))). ( -22.20, z-score = -0.63, R) >droSec1.super_1 2256835 92 + 14215200 ------CCCGUGCGCGAGUUCGAG--UUCGAGUC--UCCGCCCAUGCUUGUUGGCUUUUUUCGACGAUCA--UCCACGUUAUUUAGCCGUUAACUCCUUGGGCA ------.......(.(((((((..--..)))).)--)))(((((...(((.(((((......((((....--....))))....))))).))).....))))). ( -24.30, z-score = -0.73, R) >droSim1.chr2R 3297067 92 + 19596830 ------CCCGUGCGCGAGUUCGAG--UUCGAAUC--UCCGCCCAUGCUUGUUGGCUUUUUUCGACGAUCA--CCCACGUUAUUUAGCCGUUAACUCCUUGGGCA ------.......(.(((((((..--..)))).)--)))(((((...(((.(((((......((((....--....))))....))))).))).....))))). ( -24.30, z-score = -1.00, R) >consensus _______CCGUGCGCGAGUUCGAG__UUCGAAUC__UCCGCCCAUGCUUGUUGGCUUCUUUCGACGAUAA__CCCACGUUAUUUAGCCGUUAACUCCUUGGGCA .......................................(((((.......(((((......((((..........))))....))))).........))))). (-16.44 = -15.99 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:42 2011