| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,580,766 – 4,580,833 |
| Length | 67 |
| Max. P | 0.632172 |
| Location | 4,580,766 – 4,580,833 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Shannon entropy | 0.46459 |
| G+C content | 0.49497 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -9.28 |
| Energy contribution | -10.26 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.632172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4580766 67 + 21146708 --CCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCAGUGACUUGGAGGUACCUC--CGAGUUAAGUGCCUCG --.((((...........(((((......)))))..((((((((((....)))--)))))))))))..... ( -22.50, z-score = -3.49, R) >dp4.chr3 13722325 60 + 19779522 -----------UGCUCUAAUAUUUCAAUAAAUCAGUCGACUGGGAGGUACGUCUCCCAUCUAAGGAACCCA -----------....................((..(.((.(((((((....))))))))).)..))..... ( -11.30, z-score = -0.33, R) >droAna3.scaffold_13266 18450494 65 - 19884421 CUGCGCUCCGUUGUCCUGGGAAGGCAAUAAAUCUCUUGGCCUGGAGGUACG------AGUUAAGUGCCUGG ..(((((..((((.(((....)))))))..((((((......))))))...------.....))))).... ( -16.60, z-score = 0.57, R) >droEre2.scaffold_4929 8580799 69 - 26641161 GCGCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCAGUGACUUGGAGGUACGUU--CGAGAUAAGUGCCUGG ..(((.(((((.....))))).)))......(((((....)))))(((((...--........)))))... ( -18.00, z-score = -0.57, R) >droYak2.chr2L 17243100 69 + 22324452 CCGCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCAGUGACUUGGAGGUACGUU--CGAGCUAAGUGCCUGG ..(((.(((((.....))))).))).......((((..((((((.((.....)--)...))))))..)))) ( -19.90, z-score = -1.17, R) >droSec1.super_1 2224896 67 + 14215200 --CCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCACUGACUUGGAGGUACCUC--CGAGUUAAGUGCCUGG --(((((((((.....)))))..))........(((((((((((((....)))--)))))).))))...)) ( -23.40, z-score = -3.36, R) >droSim1.chr2R 3259198 67 + 19596830 --CCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCACUGACUUGGAGGUACCUC--CGAGUUAAGUGCCUGG --(((((((((.....)))))..))........(((((((((((((....)))--)))))).))))...)) ( -23.40, z-score = -3.36, R) >consensus __CCGCUCCUUUGUUCAAGGAUUGCAAUAAAUCCAGUGACUUGGAGGUACGUC__CGAGUUAAGUGCCUGG ......(((...(((...(((((......)))))...)))..)))(((((.............)))))... ( -9.28 = -10.26 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:37 2011