| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,580,625 – 4,580,680 |
| Length | 55 |
| Max. P | 0.997965 |
| Location | 4,580,625 – 4,580,680 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 88.71 |
| Shannon entropy | 0.19328 |
| G+C content | 0.61933 |
| Mean single sequence MFE | -12.84 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.52 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.08 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.22 |
| SVM RNA-class probability | 0.997965 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 4580625 55 - 21146708 AUCCCCCAUUUGACACCCCCAUACGCCGUGCUCCACUUCACCAUCACGGCUAUGG ..................(((((.((((((..............))))))))))) ( -13.44, z-score = -4.07, R) >droSim1.chr2R 3259057 55 - 19596830 AUCCCCCAUUUGACACCCCCAUACGCCGUGCUCCACUUCACCAUCGCGGCUAUGG ..................(((((.((((((..............))))))))))) ( -13.04, z-score = -3.23, R) >droSec1.super_1 2224755 55 - 14215200 AUCCCCCAUUUGACACCCCCAUACGCCGUGCUCCACUUCACCAUCGCGGCUAUGG ..................(((((.((((((..............))))))))))) ( -13.04, z-score = -3.23, R) >droYak2.chr2L 17242960 54 - 22324452 ACCCCCCAUUUGACA-CCCCAUCUGCCGCGCUCCACUCUUCCAUCGCGGCCAUGG ...............-..((((..((((((..............)))))).)))) ( -12.34, z-score = -2.95, R) >droEre2.scaffold_4929 8580659 54 + 26641161 AUCCCUCAUUUGACA-CCCCAUCCGCCGCGCCCCGCUCCUCCAUCGCGGCUAUGG ...............-..((((..((((((..............)))))).)))) ( -12.34, z-score = -1.91, R) >consensus AUCCCCCAUUUGACACCCCCAUACGCCGUGCUCCACUUCACCAUCGCGGCUAUGG ..................(((((.((((((..............))))))))))) (-12.52 = -12.52 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:36 2011