| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,559,783 – 4,559,886 |
| Length | 103 |
| Max. P | 0.955429 |
| Location | 4,559,783 – 4,559,886 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 91.17 |
| Shannon entropy | 0.15715 |
| G+C content | 0.40464 |
| Mean single sequence MFE | -28.94 |
| Consensus MFE | -25.04 |
| Energy contribution | -25.56 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4559783 103 + 21146708 GUUUGUGCCUUUGUCUUAAUAGAGGCAAUUAAGUGAGUUUCACUCUGAAAUUAAAAACAGUUCGUAGUCUGCGAUGUGCUGAAUGAAGACUGCAUUUUGGCCG ((((.(((((((((....)))))))))........((((((.....))))))..)))).....(((((((................))))))).......... ( -23.59, z-score = -0.52, R) >droEre2.scaffold_4929 8559823 103 - 26641161 GUUUGUGCCUUUGUCUUAAUGUAGGCAAUUAAGUGAGUUUCACUCUGAAAUGAGAAGCAGCUCGUAGUGUGCAAUCUGCCGAAUGCAGAUUGCAUUUUGCCUG .....(((((............))))).......(((((.(.(((......)))..).)))))((((.(((((((((((.....))))))))))).))))... ( -32.20, z-score = -2.53, R) >droYak2.chr2L 17220122 103 + 22324452 GUUUGUGCCUUUGUCUUAAUAGAGGCAAUUAAGUGAGUUUCACUCUGAAAUUAUAAGCAGUUCGUAGUGUGCAAUCUGCUGAAUGCAGAGUGCAUUUCGCCUG .....(((((((((....))))))))).....(((((...(((((((..(((...(((((...((.....))...))))).))).)))))))...)))))... ( -32.60, z-score = -3.06, R) >droSec1.super_1 2204263 102 + 14215200 GUUUGUGCCUU-GUCUUAAUAGAGGUAAUUAAGUGAGUUUCACUCUGAAAUUAAUAACAGUUCGUAGUCUGCGAUUUGCUGAAUGCAGACUGCAUUUUGCCCG .....((((((-.........)))))).....((.((((((.....))))))....)).....((((((((((.((....)).)))))))))).......... ( -25.10, z-score = -1.61, R) >droSim1.chr2R 3220784 103 + 19596830 GUUUGUGCCUUUGUCUUAAUAGAGGUAAUUAAGUGAGUUUCACUCUGAAAUUAAAAACAGUUCGUAGUCUGCGAUCUGCUGAAUGCAGACUGCAUUUUGCCCG ((((.(((((((((....)))))))))........((((((.....))))))..)))).....((((((((((.((....)).)))))))))).......... ( -31.20, z-score = -3.59, R) >consensus GUUUGUGCCUUUGUCUUAAUAGAGGCAAUUAAGUGAGUUUCACUCUGAAAUUAAAAACAGUUCGUAGUCUGCGAUCUGCUGAAUGCAGACUGCAUUUUGCCCG ((((.(((((((((....))))))))).(((((((.....)))).)))......)))).....((((((((((.((....)).)))))))))).......... (-25.04 = -25.56 + 0.52)
| Location | 4,559,783 – 4,559,886 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 91.17 |
| Shannon entropy | 0.15715 |
| G+C content | 0.40464 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -16.96 |
| Energy contribution | -17.84 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4559783 103 - 21146708 CGGCCAAAAUGCAGUCUUCAUUCAGCACAUCGCAGACUACGAACUGUUUUUAAUUUCAGAGUGAAACUCACUUAAUUGCCUCUAUUAAGACAAAGGCACAAAC ..(((....((.(((.(((((((.((.....))((((........)))).........))))))))))))((((((.......)))))).....)))...... ( -19.60, z-score = -1.24, R) >droEre2.scaffold_4929 8559823 103 + 26641161 CAGGCAAAAUGCAAUCUGCAUUCGGCAGAUUGCACACUACGAGCUGCUUCUCAUUUCAGAGUGAAACUCACUUAAUUGCCUACAUUAAGACAAAGGCACAAAC .((((((..((((((((((.....))))))))))......(((......)))......(((((.....)))))..))))))...................... ( -29.90, z-score = -3.71, R) >droYak2.chr2L 17220122 103 - 22324452 CAGGCGAAAUGCACUCUGCAUUCAGCAGAUUGCACACUACGAACUGCUUAUAAUUUCAGAGUGAAACUCACUUAAUUGCCUCUAUUAAGACAAAGGCACAAAC .((((((..((((.(((((.....))))).))))........................(((((.....)))))..))))))...................... ( -24.20, z-score = -2.38, R) >droSec1.super_1 2204263 102 - 14215200 CGGGCAAAAUGCAGUCUGCAUUCAGCAAAUCGCAGACUACGAACUGUUAUUAAUUUCAGAGUGAAACUCACUUAAUUACCUCUAUUAAGAC-AAGGCACAAAC ((.((.....))((((((((((.....))).))))))).))..(((..........))).(((...((..((((((.......))))))..-.)).))).... ( -18.50, z-score = -0.87, R) >droSim1.chr2R 3220784 103 - 19596830 CGGGCAAAAUGCAGUCUGCAUUCAGCAGAUCGCAGACUACGAACUGUUUUUAAUUUCAGAGUGAAACUCACUUAAUUACCUCUAUUAAGACAAAGGCACAAAC ((.((.....))(((((((..((....))..))))))).))...(((((((.......(((.....))).((((((.......))))))..)))))))..... ( -22.80, z-score = -1.93, R) >consensus CGGGCAAAAUGCAGUCUGCAUUCAGCAGAUCGCAGACUACGAACUGUUUUUAAUUUCAGAGUGAAACUCACUUAAUUGCCUCUAUUAAGACAAAGGCACAAAC .((((((..(((.((((((.....)))))).)))........................(((((.....)))))..))))))...................... (-16.96 = -17.84 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:33 2011