| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,551,730 – 4,551,825 |
| Length | 95 |
| Max. P | 0.884734 |
| Location | 4,551,730 – 4,551,825 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 91.56 |
| Shannon entropy | 0.18835 |
| G+C content | 0.64498 |
| Mean single sequence MFE | -40.29 |
| Consensus MFE | -31.34 |
| Energy contribution | -30.92 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.884734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4551730 95 + 21146708 GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGCCAUGCCCGGCAGGGCGGUGCGCAGCUA .((.(..((((((.((.((((....(((((..((((..(((....)))..))))..))))).)))).))..((((....))))))))))..))). ( -45.70, z-score = -3.35, R) >droSec1.super_1 2196229 95 + 14215200 GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGCCAUGCCCGGCAGGGCGGUGCGCAGCUA .((.(..((((((.((.((((....(((((..((((..(((....)))..))))..))))).)))).))..((((....))))))))))..))). ( -45.70, z-score = -3.35, R) >droYak2.chr2L 17211397 95 + 22324452 GAGACGACCCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGCCAUGCCCGGCAGGGCGUUGCGCAGCUA (((........)))...........(((((..((((..(((....)))..))))..)))))(((((((.((((((....)))))).)).))))). ( -42.80, z-score = -2.77, R) >droEre2.scaffold_4929 8551764 95 - 26641161 GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGCCAUGCCCGGCAGGGCGGUGCGCAGCUA .((.(..((((((.((.((((....(((((..((((..(((....)))..))))..))))).)))).))..((((....))))))))))..))). ( -45.70, z-score = -3.35, R) >droAna3.scaffold_13266 18426346 95 - 19884421 GAGACGACGCACUCGGACAGUAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGUGACGCCCGGACGGGCGAUGCGCAGCUA (((........)))...........(((((..((((..(((....)))..))))..)))))((((((((.(((((....))))).))).))))). ( -41.00, z-score = -2.90, R) >dp4.chr3 13691734 95 + 19779522 GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGUCACGCCCGGGCGGGCGGUGCGCAGCUA .((.(..(((((..(..((((....(((((..((((..(((....)))..))))..))))).))))..).(((((....))))))))))..))). ( -45.80, z-score = -3.17, R) >droPer1.super_2 1107446 95 - 9036312 GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGUCACGCCCGGGCGGGCGGUGCGCAGCUA .((.(..(((((..(..((((....(((((..((((..(((....)))..))))..))))).))))..).(((((....))))))))))..))). ( -45.80, z-score = -3.17, R) >droWil1.scaffold_180700 1621783 95 + 6630534 GAGACCACCCACUCGGAUAGUAAUACCACCAAGGUAACGGCCACGGCCAAUAUCAAGGUGGAGCUGGUCACACCCGGACGAGCCGUACGCAGUUA ..(((((((((((..((((....((((.....))))..(((....)))..))))..))))).).))))).....(((.....))).......... ( -31.30, z-score = -1.83, R) >droVir3.scaffold_12875 11391814 95 + 20611582 GAGACGACACACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGUCACGCCCGGACGUGCGGUGCGCAGCUA (((........)))(..((((....(((((..((((..(((....)))..))))..))))).))))..).((((((......))).)))...... ( -35.40, z-score = -0.82, R) >droMoj3.scaffold_6496 11330058 95 - 26866924 GAGACGACGCAUUCGGACAGCAACACCACCAAGGUGACGGCCACGGCGAACAUCAAAGUGGAGCUGGUGACGCCCGGGCGAGCGGUGCGCAGCUA .((.(..(((((.((..((((..((((.....))))....((((...(.....)...)))).))))....(((....)))..)))))))..))). ( -30.00, z-score = 0.80, R) >droGri2.scaffold_15245 4991797 95 - 18325388 GAGACGACGCUGUCGGAUAGCAACACCACCAAGGUGACGGCGACCGCUAAUAUCAAAGUGGAGCUGGUCACGCCGGGUCGAGCGGUGCGCAGCUA ........((((.((.((.((..((((.....)))).((((..(((((........)))))..((((.....)))))))).)).)).)))))).. ( -34.00, z-score = -0.49, R) >consensus GAGACGACGCACUCGGACAGCAACACCACCAAGGUGACGGCCACGGCCAACAUCAAGGUGGAGCUGGUCACGCCCGGCCGGGCGGUGCGCAGCUA (((........)))...........(((((..((((..(((....)))..))))..)))))(((((((..(((........)))..)).))))). (-31.34 = -30.92 + -0.43)
| Location | 4,551,730 – 4,551,825 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.56 |
| Shannon entropy | 0.18835 |
| G+C content | 0.64498 |
| Mean single sequence MFE | -40.27 |
| Consensus MFE | -32.46 |
| Energy contribution | -32.81 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4551730 95 - 21146708 UAGCUGCGCACCGCCCUGCCGGGCAUGGCCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))..((.((((.(((((..(.((.((((....)))).)).)..)))))....)))).))).)))))).))... ( -45.50, z-score = -2.59, R) >droSec1.super_1 2196229 95 - 14215200 UAGCUGCGCACCGCCCUGCCGGGCAUGGCCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))..((.((((.(((((..(.((.((((....)))).)).)..)))))....)))).))).)))))).))... ( -45.50, z-score = -2.59, R) >droYak2.chr2L 17211397 95 - 22324452 UAGCUGCGCAACGCCCUGCCGGGCAUGGCCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGGGUCGUCUC ..........(((.((..(((((((..((.(((.(((((..(.((.((((....)))).)).)..))))).))))))))))).)..)).)))... ( -41.50, z-score = -1.15, R) >droEre2.scaffold_4929 8551764 95 + 26641161 UAGCUGCGCACCGCCCUGCCGGGCAUGGCCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))..((.((((.(((((..(.((.((((....)))).)).)..)))))....)))).))).)))))).))... ( -45.50, z-score = -2.59, R) >droAna3.scaffold_13266 18426346 95 + 19884421 UAGCUGCGCAUCGCCCGUCCGGGCGUCACCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUACUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))(.((..(((.(((((..(.((.((((....)))).)).)..))))).)))..)).).)).))))).))... ( -38.60, z-score = -1.69, R) >dp4.chr3 13691734 95 - 19779522 UAGCUGCGCACCGCCCGCCCGGGCGUGACCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))).(((((((.(((((..(.((.((((....)))).)).)..))))).))))..)))...)))))).))... ( -44.70, z-score = -2.60, R) >droPer1.super_2 1107446 95 + 9036312 UAGCUGCGCACCGCCCGCCCGGGCGUGACCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((((((((....))))).(((((((.(((((..(.((.((((....)))).)).)..))))).))))..)))...)))))).))... ( -44.70, z-score = -2.60, R) >droWil1.scaffold_180700 1621783 95 - 6630534 UAACUGCGUACGGCUCGUCCGGGUGUGACCAGCUCCACCUUGAUAUUGGCCGUGGCCGUUACCUUGGUGGUAUUACUAUCCGAGUGGGUGGUCUC .......(.((.(((((..(((((((((......(((((..(.((.((((....)))).)).)..)))))..)))).)))))..))))).))).. ( -33.70, z-score = -0.66, R) >droVir3.scaffold_12875 11391814 95 - 20611582 UAGCUGCGCACCGCACGUCCGGGCGUGACCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGUGUCGUCUC ..((.(((((((((((((....)))))..((((.(((((..(.((.((((....)))).)).)..)))))....))))..)).)))))).))... ( -39.80, z-score = -1.26, R) >droMoj3.scaffold_6496 11330058 95 + 26866924 UAGCUGCGCACCGCUCGCCCGGGCGUCACCAGCUCCACUUUGAUGUUCGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAAUGCGUCGUCUC ..((.(((((.(((((....))))).((.((((.(((((.(((((...((....)))))))....))))).)))).))......))))).))... ( -31.80, z-score = 0.21, R) >droGri2.scaffold_15245 4991797 95 + 18325388 UAGCUGCGCACCGCUCGACCCGGCGUGACCAGCUCCACUUUGAUAUUAGCGGUCGCCGUCACCUUGGUGGUGUUGCUAUCCGACAGCGUCGUCUC ((((...(((((((.(((...(((((((((.(((.............)))))))).))))...)))))))))).))))..((((...)))).... ( -31.62, z-score = -0.32, R) >consensus UAGCUGCGCACCGCCCGGCCGGGCGUGACCAGCUCCACCUUGAUGUUGGCCGUGGCCGUCACCUUGGUGGUGUUGCUGUCCGAGUGCGUCGUCUC ..((.(((((..((((....))))..(((((((.(((((..(.((.((((....)))).)).)..))))).))))..)))....))))).))... (-32.46 = -32.81 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:31 2011