| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,530,082 – 4,530,172 |
| Length | 90 |
| Max. P | 0.537013 |
| Location | 4,530,082 – 4,530,172 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 66.52 |
| Shannon entropy | 0.60908 |
| G+C content | 0.37653 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -6.24 |
| Energy contribution | -8.12 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4530082 90 - 21146708 AGAACUUAGAUCACAUUUAAAUAAUUUUUCUAGGUGCACAAUGGUCGUUAUUUAUGAGCUCCAAUGUGCCGGAAGUUUCCGAUUAGCCCG ...(((((((..................)))))))(((((.(((((((.....))))...))).)))))((((....))))......... ( -20.37, z-score = -1.68, R) >droSim1.chr2R 3189913 89 - 19596830 AAUAUUCAAA-AACAUUUAAAUAAUUUCUCUGGGUGCACAGUGGACUUUAUUUAUGAGCUCCAAUGUGCCGGAAGUUUCCGAUUAGCCCG ..........-....................(((((((((.(((((((.......))).)))).)))))((((....))))....)))). ( -24.30, z-score = -3.08, R) >droSec1.super_1 2174584 85 - 14215200 AGUAUUU-----AUAUUUAAAUAAUUUCUCUGGGUGCACAGUGGACUUUAUUUAUGAGCUCCGAUGUGCCGGAAGUUUCCGAUUAGCCCG ..(((((-----(....))))))........(((((((((.(((((((.......))).)))).)))))((((....))))....)))). ( -25.10, z-score = -3.03, R) >droYak2.chr2L 17190141 83 - 22324452 ------AAUAACAGACACAAAGAAUAUUAUAAAAAACAACUGUGACUUUAUUUAUUAGCUCCAAUGUGCCGGAAGUU-CCGAUUAGCCCG ------.........((((..((.((..(((((..((....))...)))))....))..))...)))).(((.....-)))......... ( -6.50, z-score = 0.93, R) >droAna3.scaffold_13266 18405435 69 + 19884421 ---------------------UAAUUUUCCUCAGUGUAUAAAUAAGUUUAUUUAUGAGCUUCGCCCUGCCGGAAGUUAGUGAUUUACCCU ---------------------((((((((..(((.((......(((((((....))))))).)).)))..))))))))............ ( -10.00, z-score = -0.65, R) >consensus A__A_UUA_A__ACAUUUAAAUAAUUUUUCUAGGUGCACAAUGGACUUUAUUUAUGAGCUCCAAUGUGCCGGAAGUUUCCGAUUAGCCCG ...................................(((((.((((.((((....)))).)))).)))))(((......)))......... ( -6.24 = -8.12 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:30 2011