| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,511,383 – 4,511,478 |
| Length | 95 |
| Max. P | 0.720492 |
| Location | 4,511,383 – 4,511,478 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.55 |
| Shannon entropy | 0.08700 |
| G+C content | 0.25650 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.61 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4511383 95 - 21146708 UCCUAGAUCUUAUACAUAUACCUACAUCCAUAUAUAUAUACUUGAUUUUCUGGUUGUUUAAAUUAGUUUUUAAGUAUUUAAAAAUGGCAUGUGGU .....................((((((((((......((((((((....((((((.....))))))...))))))))......)))).)))))). ( -20.70, z-score = -2.50, R) >droSim1.chr2R 3165598 89 - 19596830 UCCUAGAUCUUAUACAUAUACAUACAUCCA------UAUACUUGAUUUUCUGGUUGUUUAAAUUAGUUUUUAAGUAUUUAAAAAUGGCAUGUGGU ......................((((((((------(((((((((....((((((.....))))))...))))))))......)))).))))).. ( -16.30, z-score = -1.32, R) >droEre2.scaffold_4929 8512186 89 + 26641161 UCCUAGAUCUUAUACAUAUACAUCCAUCUA------UAUACUUGAUUUUCUGGUUGUUUAAAUUAGUUUUUAAGUAUUUAAAAAUGGCAUGUGGU ..................(((((((((...------.((((((((....((((((.....))))))...))))))))......)))).))))).. ( -17.50, z-score = -1.95, R) >consensus UCCUAGAUCUUAUACAUAUACAUACAUCCA______UAUACUUGAUUUUCUGGUUGUUUAAAUUAGUUUUUAAGUAUUUAAAAAUGGCAUGUGGU ......................((((((((.......((((((((....((((((.....))))))...)))))))).......))).))))).. (-15.49 = -15.61 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:29 2011