| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,500,515 – 4,500,607 |
| Length | 92 |
| Max. P | 0.510429 |
| Location | 4,500,515 – 4,500,607 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 68.64 |
| Shannon entropy | 0.66442 |
| G+C content | 0.50914 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -11.73 |
| Energy contribution | -11.50 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4500515 92 - 21146708 CGCCUUCACGCACAUGAACUGUGCGGAGCACCACCAGGGAGCCUGGUGGUACGACUUCUGUUCCCGCAGGUAAGGAUGGGUACUAUUGAUAU------ .(((((((......))).(((((.((((((((((((((...)))))))))..(....).))))))))))........))))...........------ ( -32.00, z-score = -1.10, R) >droMoj3.scaffold_6496 11271512 91 + 26866924 UGAAUUCACUCACAUCAAUUGUGCUGAGUAUCAUCAUGGGGCGUGGUGGUAUGACUUCUGUUCGCGCAGGUGGGUGUGCAAUAGGUGCUAU------- ......((((((((((..((((((...(((((((((((...)))))))))))(((....))).))))))...)))))).....))))....------- ( -27.80, z-score = -0.74, R) >droPer1.super_2 3458675 98 + 9036312 UGAAUUUACGCAUAUGAAUUGCGCCGAGUAUCACCACGGAGCCUGGUGGUACGACUUCUGUUCGCGAAGGUAAUUCAUCCGUCCGCUGAGUAUUACAC ...(((((((.(((((((((((.....(((((((((.(....))))))))))..((((.......)))))))))))))..)).)).)))))....... ( -27.50, z-score = -0.87, R) >droAna3.scaffold_13266 18377942 82 + 19884421 UGAGUUUACUCAUAUGAACUGUGCCGAGUAUCAUCACGGGGCGUGGUGGUAUGAUUUUUGUUCAAGAAGGUAGGGGGACUAU---------------- ((((....))))......((.((((..(((((((((((...)))))))))))..(((((....))))))))).)).......---------------- ( -23.40, z-score = -1.87, R) >droSim1.chr2R 3150455 92 - 19596830 CGCCUUCACGCACAUGAACUGUGCGGAGCACCACCAGGGAGCCUGGUGGUACGACUUCUGUUCCCGCAGGUAAGGAUCUACACACCACAUUU------ .((((.(..(((((.....)))))((((((((((((((...)))))))))..(....).))))).).)))).....................------ ( -31.60, z-score = -1.79, R) >droSec1.super_1 2144127 92 - 14215200 CGCCUUCACGCACAUGAACUGCGCGGAGCACCACCAGGGAGCUUGGUGGUACGACUUCUGUUCCCGCAGGUAAGGAGUAAUACUAUUGAUGU------ .((......))((((.(((((((.((((((((((((((...)))))))))..(....).))))))))))(((........)))..)).))))------ ( -30.40, z-score = -1.11, R) >droYak2.chr2L 17156694 92 - 22324452 UGCCUUCACGCACAUGAACUGCGCGGAGCACCAUCAGGGAGCUUGGUGGUACGACUUCUGUUCGCGAAGGUAGGAAGUAUUAGUAUUAGUCU------ (((((((.((.(((.(((..((.....))(((((((((...))))))))).....)))))).)).)))))))....................------ ( -27.40, z-score = -0.45, R) >droEre2.scaffold_4929 8501080 86 + 26641161 UGCCUUCACGCACAUGAACUGCGCGGAGCACCAUCAGGGAGCCUGGUGGUACGACUUCUGUUCCCGCAGGUAAGGAGUAUUAGUAC------------ ..((((.((.(....)..(((((.((((((((((((((...)))))))))..(....).))))))))))))))))...........------------ ( -29.90, z-score = -1.26, R) >droWil1.scaffold_180699 2563499 72 - 2593675 UGAAUUUAUCCAUAUGAAUUGUGCGGUUCAUCAUCAUGGCGCUUGGUGGUACGAUUUUUGCUCCAGAAGGUA-------------------------- .........(((((((((((....)))))))....)))).((((..(((..(((...)))..)))..)))).-------------------------- ( -12.80, z-score = 1.15, R) >dp4.chr3 14407232 73 + 19779522 UGAAUUUACGCAUAUGAAUUGCGCCGAGUAUCACCACGGAGCCUGGUGGUACGACUUCUGUUCGCGAAGGUAA------------------------- .((((...((((.......))))....(((((((((.(....)))))))))).......))))((....))..------------------------- ( -20.70, z-score = -0.90, R) >droVir3.scaffold_12875 11334506 88 - 20611582 CGAGUUCACGCACAUCAAUUGCGCUGAAUACCAUCAUGGGGCUUGGUGGUACGACUUUUGCUCCCGCAGGUAGGACCCGAAAUAGCCA---------- ...(((((((((.......)))).))))).((.....))((((....(((...(((..(((....))))))...)))......)))).---------- ( -22.30, z-score = 0.64, R) >consensus UGACUUCACGCACAUGAACUGCGCGGAGCACCAUCAGGGAGCCUGGUGGUACGACUUCUGUUCCCGCAGGUAAGGAGUAAUACUAC____________ ........((((.......))))......(((((((((...)))))))))...((((.((....)).))))........................... (-11.73 = -11.50 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:27 2011