| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,493,642 – 4,493,734 |
| Length | 92 |
| Max. P | 0.824387 |
| Location | 4,493,642 – 4,493,734 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 71.96 |
| Shannon entropy | 0.52875 |
| G+C content | 0.39596 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -8.54 |
| Energy contribution | -9.17 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4493642 92 - 21146708 CAACAUUUCUAGUCCAUAUCGAAUGGCUCCAACGGCUGCACAGCUGUUU--UAUAUCAUAUUAUUUC--CAUCUAUUCUCCCGGCCAUUCUAAUGA ..............(((...((((((((..(((((((....))))))).--.(((......)))...--.............))))))))..))). ( -17.70, z-score = -2.18, R) >droAna3.scaffold_13266 18372661 76 + 19884421 CCUGCAUUCCAGCUCAUAUCGGAU------AUUGGUUGUACAGGUGUUUUCUUUUUCAUAAUAGUUU-CCAACUAUUCUGUUU------------- ((((.....(((((.((((...))------)).)))))..))))............((.((((((..-...)))))).))...------------- ( -10.70, z-score = -0.43, R) >droEre2.scaffold_4929 8494646 89 + 26641161 CGUUCCUUCUAGUCCAUAUCGAAUAGCGCCGACGGCUGCACAGCUGUUU--UAUAUCA--UUAUUUC--CAUCUAUUCUGCU-GAUAUUCUAAUGA .........(((...(((((((((((....(((((((....))))))).--.(((...--.)))...--...))))))....-))))).))).... ( -12.80, z-score = 0.41, R) >droYak2.chr2L 17150349 93 - 22324452 CGUUCUUUCUAGUCCAUAUCGAAUAGCGCCAACGGCUGCACAGCUGUUU--UAUAUCAUAUUAUUUCAUCAUCUAUUCUCCU-GCUAUUCUAAUGA ..............(((...(((((((...(((((((....))))))).--.(((......)))..................-)))))))..))). ( -15.40, z-score = -1.61, R) >droSec1.super_1 2135444 80 - 14215200 ------------UCCAUAUCGAAUGGCUCCAACGGCUGCACAUCUGUUU--UAUAUCAUAUUAUUUC--CAUCUAUUCUCCCGGCCAUUCCAAUGA ------------..(((...((((((((..(((((........))))).--.(((......)))...--.............))))))))..))). ( -11.50, z-score = -0.43, R) >droSim1.chr2R 3140322 80 - 19596830 ------------UCCAUAUCGAAUGGCUCCAACGGCUGCACAGCUGUUU--UAUAUCAUAUUAUUUC--CAUCUAUUCUCCCGGCCAUUCCAAUGA ------------..(((...((((((((..(((((((....))))))).--.(((......)))...--.............))))))))..))). ( -17.70, z-score = -2.51, R) >consensus C_U_C_UUCUAGUCCAUAUCGAAUGGCUCCAACGGCUGCACAGCUGUUU__UAUAUCAUAUUAUUUC__CAUCUAUUCUCCCGGCCAUUCUAAUGA ....................(((((((...(((((((....)))))))....(((......)))...................)))))))...... ( -8.54 = -9.17 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:26 2011