Locus 3343

Sequence ID dm3.chr2R
Location 4,492,605 – 4,492,688
Length 83
Max. P 0.983697
window4600

overview

Window 0

Location 4,492,605 – 4,492,688
Length 83
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 77.88
Shannon entropy 0.36035
G+C content 0.48924
Mean single sequence MFE -27.02
Consensus MFE -18.30
Energy contribution -19.43
Covariance contribution 1.13
Combinations/Pair 1.09
Mean z-score -2.46
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.14
SVM RNA-class probability 0.983697
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 4492605 83 + 21146708
GCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGACCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGGCGGUAUGUGCA--------
((((((((((((...(((....))).(((((((.(((.((((((.....))))))))))))))))..))))..)))).)))).-------- ( -31.00, z-score =  -2.61, R)
>droYak2.chr2L 17149392 69 + 22324452
GCAUUGCUUGACCAACGGAUUCUGCACUUUGAUAUGGGCCGCACUGCAAAUGUGGCUACUCGAAGAAUC----------------------
....(((..((((...)).))..)))((((((....(((((((.......)))))))..))))))....---------------------- ( -17.50, z-score =  -1.17, R)
>droSec1.super_1 2134444 91 + 14215200
GCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGGCCGCACUGAAAGUGUGGCUAAUCGAAGAAGUCGACACUAUAUAUGUAUAUACA
((((((.(((((...(((....))).(((((((...((((((((.....)))))))).)))))))..)))))))......))))....... ( -28.80, z-score =  -3.38, R)
>droSim1.chr2R 3139321 91 + 19596830
GCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGGCCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGACAGUAUGUAUGUAUAUCCA
..((((.(((((...(((....))).(((((((...((((((((.....)))))))).)))))))..)))))))))............... ( -30.80, z-score =  -2.66, R)
>consensus
GCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGGCCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGACAGUAUGUAUG________
.....((((......(((....))).(((((((...((((((((.....)))))))).)))))))))))...................... (-18.30 = -19.43 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:25 2011