| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,482,327 – 4,482,399 |
| Length | 72 |
| Max. P | 0.521735 |
| Location | 4,482,327 – 4,482,399 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 71.01 |
| Shannon entropy | 0.56371 |
| G+C content | 0.52528 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -10.05 |
| Energy contribution | -11.93 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4482327 72 + 21146708 -AGAAACUUGGCUCAAAGGG--CACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGUUGGUAGUU -......(..((.((.....--((((((((((((.(((.....))).))))..))))))))..))))..)..... ( -20.80, z-score = -0.51, R) >droSim1.chr2R 3123851 72 + 19596830 -AGAAACUCGGCUCAAAGGG--CACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGUUGGUAGUU -....((((.(((.....))--)(((((((((((.(((.....))).))))..)))))))))))........... ( -22.00, z-score = -0.84, R) >droSec1.super_1 2123977 72 + 14215200 -AGAGACGCGGCUCAAAGGG--CACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGUUGGUAGUU -....((.((((.((.....--((((((((((((.(((.....))).))))..))))))))..)))))))).... ( -21.90, z-score = -0.64, R) >droYak2.chr2L 17139140 66 + 22324452 -AGAGACUCGGCUCAAUGG----GCUUACCAGCUUGCAGAACAUGUUGGCUAUGGUGAGUGG----GUGGUGGUU -...(((((.((((.....----(((((((((((.(((.....))).)))..))))))))))----)).).)))) ( -20.80, z-score = -0.96, R) >droEre2.scaffold_4929 8483403 62 - 26641161 -AGAGACUCGGC-----------ACUUACCAGCUUGCAGAACAUGUUGGCUAUGGUGAGUGG-UGGGUGGUGGUU -....(((((.(-----------(((((((((((.(((.....))).)))..))))))))).-)))))....... ( -25.70, z-score = -3.39, R) >droAna3.scaffold_13266 18361946 64 - 19884421 AGGAGCUUUAAGUC--------CACUUACCAGCUUGAAGAACAUGUUGU---GGGUGAGUGGGUGGGUGUUGCUG ...(((..((.(((--------((((((((.((..............))---.)))))))))))...))..))). ( -19.34, z-score = -1.22, R) >droPer1.super_2 642937 68 + 9036312 -GGAGGUCUGGAGGCAUGGACCCACUUACCAGCUUGAAGAACAUCGGGAC--GAAUGUUUGUGCGAGUGGC---- -(..((((((......))))))..)...(((.((((..((((((((...)--).))))))...))))))).---- ( -18.70, z-score = -0.22, R) >consensus _AGAGACUCGGCUCAAAGG___CACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGGUGGUAGUU ......................((((((((((((.(((.....))).))))..)))))))).............. (-10.05 = -11.93 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:25 2011