| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,477,794 – 4,477,853 |
| Length | 59 |
| Max. P | 0.992548 |
| Location | 4,477,794 – 4,477,853 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 82.15 |
| Shannon entropy | 0.32244 |
| G+C content | 0.47068 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.27 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.55 |
| SVM RNA-class probability | 0.992548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4477794 59 - 21146708 UCAACG-GCCAAGCGAAAAUAAGCAUAACAGUGGACGCGCGACUGUUAACAUGGCCAACA .....(-((((.((........)).(((((((.(.....).)))))))...))))).... ( -20.10, z-score = -3.64, R) >droSim1.chr2R 3115636 59 - 19596830 UCAACG-GCCAAGCGACAAUAAGCAUAACAGUGGACGCGCGACUGUUAACAUGGCCAACA .....(-((((.((........)).(((((((.(.....).)))))))...))))).... ( -20.10, z-score = -3.57, R) >droSec1.super_1 2119490 59 - 14215200 UCAACG-GCCAAGCGACAAUAAGCAUAACAGUGGACGCGCGACUGUUAACAUGGCCAACA .....(-((((.((........)).(((((((.(.....).)))))))...))))).... ( -20.10, z-score = -3.57, R) >droEre2.scaffold_4929 8479004 59 + 26641161 UCAACG-GCCAAGCGACAAUAAGCAUAACAGUGGACGAACGACUGUUAACAUGGCCAACA .....(-((((.((........)).(((((((.(.....).)))))))...))))).... ( -19.90, z-score = -4.81, R) >droAna3.scaffold_13266 18358425 54 + 19884421 -UAAUGCGAAAAACAACAAUAGCCAUAACAGUGGAC-----UCUGUUGGCCAUGUUAAUA -.............((((...((((..((((.....-----.))))))))..)))).... ( -10.20, z-score = -1.00, R) >consensus UCAACG_GCCAAGCGACAAUAAGCAUAACAGUGGACGCGCGACUGUUAACAUGGCCAACA .....(.((((.((........)).(((((((.(.....).)))))))...))))).... (-10.10 = -10.50 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:24 2011