| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,475,730 – 4,475,828 |
| Length | 98 |
| Max. P | 0.839514 |
| Location | 4,475,730 – 4,475,828 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.59 |
| Shannon entropy | 0.29341 |
| G+C content | 0.43588 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -19.18 |
| Energy contribution | -19.05 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4475730 98 - 21146708 UAAUUGGACGGCGGAACAUGACCGGCUGUUCAGUCUAUCGGUUGAACAUGAGU----------------------GGACAAAUCGUUUGUGAUAAAAGCGAGCAAGAUUGAUAUGGAAUA ..((((((((((.(........).)))))))))).(((((((((..((....)----------------------)..).....((((((.......))))))..))))))))....... ( -23.20, z-score = -0.80, R) >droSim1.chr2R 3113449 96 - 19596830 UAAUUGGACGGCGGAACAUGACCGGCUGUUCAGCCGAUCGGUUGAACAUGAGU----------------------GGACAAAUCGUUUGUGAUAAAAGCGAACAAGAUUGAUAUGGGA-- ...(((..((.(((.......))).)(((((((((....))))))))).....----------------------)..)))...((((((.......))))))...............-- ( -25.70, z-score = -1.48, R) >droSec1.super_1 2117361 98 - 14215200 UAAUUGGGCGGCGGAACAUGACUGGCUGUUCAGUCGAUCGGUUGAACAUGAGU----------------------GGACAAAUCGUUUGUGAUAAAAGCGAACAAGAUUGAUAUGGGAAA ....((((((((.(........).))))))))((((((((((((..((....)----------------------)..).))))((((((.......))))))..)))))))........ ( -24.60, z-score = -1.60, R) >droYak2.chr2L 17132391 98 - 22324452 UAAUUGGACGGCGGAACAUGACCGGCUGUUCACUCGAUCGGUUAAACAUGAGU----------------------GGACAAAUUGUUUGUGAUAAAAGCGAGCAAGAUUGAUAUGAGAUA ....((((((((.(........).))))))))(((((((((((...((....)----------------------)......((((((((.......))))))))))))))).))))... ( -26.20, z-score = -2.30, R) >droEre2.scaffold_4929 8476945 98 + 26641161 UAAUUGGACGGCGGAACAUGAGCGGCUGUUCAGUCGAUCGGGCGAACAUGAGU----------------------GGACAAAUUGCUUGUGAUAAAGGCGGGCAAGAUUGAUAUGAGAUA ....((((((((.(........).))))))))(((((((..(((..((....)----------------------)..)...((((((.......))))))))..)))))))........ ( -27.00, z-score = -2.05, R) >droAna3.scaffold_13266 18356328 120 + 19884421 UAAUUGGACGGCGAAACAUGGCCGGCUGUUCACUCAAUUGGUUAAACAUGAGUGGACAUAAGUCCACAGAGCUUCGGACAAAUCGUUUAUGAUAAAAACAAAAAUGAUUGAUACCAGAUA ....((((((((........)))...((((((((((..((......))))))))))))...))))).........((...((((((((.((.......)).))))))))....))..... ( -33.30, z-score = -3.15, R) >consensus UAAUUGGACGGCGGAACAUGACCGGCUGUUCAGUCGAUCGGUUGAACAUGAGU______________________GGACAAAUCGUUUGUGAUAAAAGCGAACAAGAUUGAUAUGAGAUA ....((((((((.(........).))))))))((((((((......).....................................((((((.......))))))..)))))))........ (-19.18 = -19.05 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:23 2011