| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,468,826 – 4,468,928 |
| Length | 102 |
| Max. P | 0.500000 |
| Location | 4,468,826 – 4,468,928 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.12 |
| Shannon entropy | 0.45767 |
| G+C content | 0.64542 |
| Mean single sequence MFE | -42.56 |
| Consensus MFE | -24.28 |
| Energy contribution | -25.82 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 4468826 102 + 21146708 GAGCCUUCGUAGGGGCGCGGUGG------------AUACUCCGGACGAUCGGCCGUAGGACGCGGAGGUCCGGGCGGAUAUUCCGGACGAUCGGCUGUCGGACGAGGUGGCCUU--- ..((((((((.....((((((.(------------((..((((((..(((.(((...((((......)))).))).)))..))))))..))).)))).)).)))))..)))...--- ( -44.00, z-score = -0.04, R) >droEre2.scaffold_4929 8469771 102 - 26641161 GAGCCAUCGUAGGGACGCGGUGG------------AUACUCCGGACGAUCGGCCGUAGGGCGUGGAGGUCCUGGCGGAUAUUCUGGACGAUCGGCAGUGGGACGAGGUGGCCUU--- ..((((((...(...(((.((.(------------((..((((((..(((.(((..(((((......)))))))).)))..))))))..))).)).)))...)..))))))...--- ( -44.00, z-score = -1.38, R) >droAna3.scaffold_13266 18349858 113 - 19884421 GAGCUUUCGUAGGGACGUGGUGGUGGCCCUGGCGGAUAAUCCGGACGAUCGGCGGUGGGUCGUGGUGGGCCUGGCGGAUAGUCGGGACGAUCGGCGGUGGGUCGUGGUGGCCU---- ..(((..(((....))).)))(((.(((....(((.....))).((((((.((.((.((((((......((((((.....)))))))))))).)).)).))))))))).))).---- ( -47.10, z-score = -0.54, R) >droWil1.scaffold_181141 2098683 93 - 5303230 GAGCUGUCAUAGGGCCUGGGCGG------------------GGGAUAAUCAUUGGUUGGACGGGCUGAC---GGAGGAUAAUC--AUUGAUAGGACGUGGCA-GCGGUGGUCUGGGC ..((((((((....((((..(((------------------..(((.(((.((.((..(.....)..))---.)).))).)))--.))).))))..))))))-))............ ( -28.20, z-score = -1.35, R) >droYak2.chr2L 17125619 102 + 22324452 GAGCCGUCGUAGGGACGCGGUGG------------AUACUCCGGACGAUCGGCCGUAGGACGUGGAGGUCCGGGCGGAUAUUCUGGACGAUCGGCUGUGGGACGAGGUGGCCUC--- ..(((..(...(...((((((.(------------((..((((((..(((.(((...((((......)))).))).)))..))))))..))).))))))...)..)..)))...--- ( -45.50, z-score = -1.25, R) >droSec1.super_1 2110409 102 + 14215200 AAGCCUUCGUAGGGACGCGGUGG------------AUACUCCGGACGAUCGGCCGUAGGACGUGGAGGUCCGGGUGGAUAUUCCGGACGAUCGGCUGUCGGACGAGGUGGCCUA--- ..((((((((.....((((((.(------------((..((((((..(((.(((...((((......)))).))).)))..))))))..))).)))).)).)))))..)))...--- ( -43.80, z-score = -0.77, R) >droSim1.chr2R 3106650 102 + 19596830 GAGCCUUCGUAGGGACGCGGUGG------------AUACUCUGGUCGAUCGGCCGUAGGACGUGGAGGUCCGGGCGGAUAUUUCGGAACAUCGGCUGUGGGACGAGGAGGCAUA--- ..((((((...(...((((((.(------------((..(((((...(((.(((...((((......)))).))).)))...)))))..))).))))))...)..))))))...--- ( -45.30, z-score = -2.96, R) >consensus GAGCCUUCGUAGGGACGCGGUGG____________AUACUCCGGACGAUCGGCCGUAGGACGUGGAGGUCCGGGCGGAUAUUCCGGACGAUCGGCUGUGGGACGAGGUGGCCUA___ ..((((((...(...((((((.(................((((((..(((.(((...((((......)))).))).)))..))))))....).))))))...)..))))))...... (-24.28 = -25.82 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:22 2011