| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,465,260 – 4,465,355 |
| Length | 95 |
| Max. P | 0.548542 |
| Location | 4,465,260 – 4,465,355 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.56 |
| Shannon entropy | 0.18605 |
| G+C content | 0.32620 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -16.17 |
| Energy contribution | -16.55 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4465260 95 + 21146708 AGAAUAAUUGUCAGAGCCAUUUCACUUUCUAACACGAAUUGUAAUUUUUAAAAUUG--AUUCGCAGGAAGAGGAACAAUUCUUUUCCCAAGUGCAUU ......................(((((.......(((((((.............))--)))))..(((((((((....))))))))).))))).... ( -15.22, z-score = -0.30, R) >droSim1.chr2R_random 1532714 96 + 2996586 AGAAUAAUGGUCAGAGCAAUUUCACUUUCUAACACGAAUUGUAAUUGU-AAAAUUGAAAUUCGCAGGAAGAGGAACAAUUCUUUUCCCAAGUGCAUU ((((....(((.(((....))).)))))))..((((((((.(((((..-..))))).)))))...(((((((((....)))))))))...))).... ( -19.40, z-score = -1.23, R) >droSec1.super_1 2106602 96 + 14215200 AGAAUAAUUGUCAGAUCCAUUUCACUUUCUAACACGAAUUGUAAUUGU-AAAAUUGAAAUUCGCAGGAAGAGGAACAAUUCUUUUCCCAAGUGCAUU ......................(((((.......((((((.(((((..-..))))).))))))..(((((((((....))))))))).))))).... ( -18.80, z-score = -1.36, R) >droEre2.scaffold_4929 8465734 90 - 26641161 UGACUAAUCGU-AAACC--UUUCACUUUCUAGCAACAAUU-UAAUUUU-AAAAUUG--AUUCUCAGGAAGAGGAGGAAUUCUUUUCCCAAGUGCAUU ...........-.....--............(((.(((((-(......-.))))))--...((..(((((((((....)))))))))..)))))... ( -15.60, z-score = -0.64, R) >consensus AGAAUAAUUGUCAGAGCCAUUUCACUUUCUAACACGAAUUGUAAUUGU_AAAAUUG__AUUCGCAGGAAGAGGAACAAUUCUUUUCCCAAGUGCAUU ......................(((((.......((((((.(((((.....))))).))))))..(((((((((....))))))))).))))).... (-16.17 = -16.55 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:21 2011