| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,443,860 – 4,443,986 |
| Length | 126 |
| Max. P | 0.706251 |
| Location | 4,443,860 – 4,443,986 |
|---|---|
| Length | 126 |
| Sequences | 6 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 80.24 |
| Shannon entropy | 0.37948 |
| G+C content | 0.43724 |
| Mean single sequence MFE | -33.12 |
| Consensus MFE | -19.06 |
| Energy contribution | -20.37 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.706251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4443860 126 + 21146708 CGUAAUGGCAGCGACACUCAGCAGAAGUGCUCAUCGCGA--GGCAGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACAUAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUUAAAA ..((((((....(((((((....).)))).)).((((((--.((((..((((.......))))..))))...................((((((.....))))))......))))))..))))))... ( -32.80, z-score = -1.38, R) >droSim1.chr2R 3084164 126 + 19596830 CGUAAUGGCAGCGACACUCGGCAGAAGUGCUCAUCGCGC--GGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUUAAAA ..........((((..((((.(....((((.....))))--.))))).)))).(((((.((((...(((((.....))))).......((((((.....))))))......)))).)))))....... ( -32.30, z-score = -0.41, R) >droSec1.super_1 2085685 126 + 14215200 CGUAAUGGCCGCGACACUCGGCAGAAGUGCUCAUCGCGC--GGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAAUUAUUAAAA .((((((((((((......((((....)))).....)))--)))(((.((((.......)))))))(((((.....))))).......((((((.....)))))).))))))................ ( -37.20, z-score = -1.69, R) >droYak2.chr2L 17099777 126 + 22324452 CGUAAUGGCAGCGGCACUCAGCAGAAGUGCUCAUCGCGA--GAUGGGAACGCAAAAUUAGCGGCUCCGUGAAAAACUCACACAAUUUUGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUUAAAA ..((((((....(((((((....).))))))..((((((--(((((((.(((.......)))..)))((((.....)))).......(((((((.....))))))))))).))))))..))))))... ( -37.70, z-score = -2.69, R) >droEre2.scaffold_4929 8445129 124 - 26641161 CGUAAUGGCAGAGACACUCACCAGAAGUGCUCAUCGCGG--GACGGGAACGCAAAAUUAGCGGCUCUGCGAAAAACUCAC--AAUUUAGCACACAAGAAGUUUGCACAGUUUCGCGAAUUUAUUAAAA ..((((((..(((.(((((....).))))))).(((((.--.(((((..(((.......)))..))).............--......(((.((.....)).)))...))..)))))..))))))... ( -31.30, z-score = -1.38, R) >droAna3.scaffold_13266 18322674 119 - 19884421 CGUAAUGGGAAAGAUAUUCCGCCAAACUGGCUACCAAAAUUAGCCGUGCUCGAAAACACACAGCUUUUCCCACAAA------AAACGUGCA---AAAAAGUUUGCACAUAAUCACGAAUUUAUUAUAA (((..((((((((...............(((((.......)))))(((........))).....))))))))....------....(((((---((....)))))))......)))............ ( -27.40, z-score = -3.14, R) >consensus CGUAAUGGCAGCGACACUCAGCAGAAGUGCUCAUCGCGA__GGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUUAAAA ..((((((....((((((.......)))).)).(((((....(((((..(((.......)))..)))))...................((((((.....)))))).......)))))..))))))... (-19.06 = -20.37 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:19 2011