Locus 3334

Sequence ID dm3.chr2R
Location 4,432,972 – 4,433,087
Length 115
Max. P 0.967442
window4590

overview

Window 0

Location 4,432,972 – 4,433,087
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Shannon entropy 0.08418
G+C content 0.33816
Mean single sequence MFE -24.03
Consensus MFE -22.45
Energy contribution -22.23
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.78
SVM RNA-class probability 0.967442
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 4432972 115 - 21146708
CAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAGGAUACAAUGGUGAGGCGAUCGAAGAACUUGCAUUAUCCUAUAAAAGUUUGCGAAAG-----
.....(((((((((.(((((....)))))............................((((((.....(..((............))..)..))))))...))))))))).....----- ( -26.10, z-score =  -2.93, R)
>droSec1.super_1 2074842 120 - 14215200
CAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCGAACUGAAAG
.....(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))).......... ( -23.00, z-score =  -1.95, R)
>droSim1.chr2R 3071284 120 - 19596830
CAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCGAACUGAAAG
.....(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))).......... ( -23.00, z-score =  -1.95, R)
>consensus
CAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCGAACUGAAAG
.....(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))).......... (-22.45 = -22.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:17 2011