| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,431,930 – 4,432,020 |
| Length | 90 |
| Max. P | 0.576859 |
| Location | 4,431,930 – 4,432,020 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 89.63 |
| Shannon entropy | 0.17818 |
| G+C content | 0.41840 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -13.42 |
| Energy contribution | -15.14 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4431930 90 - 21146708 GAAAAUGACUGCAUUUUCCCCUUUCGUUUUUCCUGCCAGCCAUACAAUAUGGUCCAAUACUUGGCACAAUGAACAAAUGUAGGAAAGCUA (((((((....))))))).(((..((((((((.(((((((((((...))))))........)))))....))).))))).)))....... ( -19.90, z-score = -1.63, R) >droEre2.scaffold_4929 8432579 87 + 26641161 GAAAAUGAUUGCCCCUUCCCCUUC--UCUUUCCUGCCUGCCAAACAAUGUGGCCCAAUAC-UGCCACAAUGAACAAAUGUAGGAAAGCUA ........................--.(((((((((........((.((((((.......-.)))))).)).......)))))))))... ( -20.96, z-score = -3.76, R) >droYak2.chr2L 17087330 87 - 22324452 GAAAAUGAUUGCACUUUCCCCUUA--UUCUCCCUGCCGGCCAUACAAUAUGGCCCAAUAC-UGCCACAUUGAACAAAUGUAGGAAAGCUA .............((((((.....--...........(((((((...)))))))......-....(((((.....))))).))))))... ( -18.90, z-score = -1.99, R) >droSec1.super_1 2073802 88 - 14215200 GAAAAUGACUGCAUUUUACCCUUC--UCUUUCCUGCCAGCCAUACAAUAUGGUCCAAUACUUGGCACAAUGAACAAAUGUAGGAAAGCUA .((((((....)))))).......--.(((((((((..((((((...))))))(((.....)))..............)))))))))... ( -18.70, z-score = -1.72, R) >droSim1.chr2R 3070219 88 - 19596830 GAAAAUGACUGCAUUUUACCCUUC--UCUUUCCUGCCAGCCAUACAAUAUGGUCCAAUACUUGGCACAAUGAACAAAUGUAGGAAAGCUA .((((((....)))))).......--.(((((((((..((((((...))))))(((.....)))..............)))))))))... ( -18.70, z-score = -1.72, R) >consensus GAAAAUGACUGCAUUUUCCCCUUC__UCUUUCCUGCCAGCCAUACAAUAUGGUCCAAUACUUGGCACAAUGAACAAAUGUAGGAAAGCUA (((((((....))))))).........(((((((((..((((((...))))))(((.....)))..............)))))))))... (-13.42 = -15.14 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:16 2011