| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,426,612 – 4,426,704 |
| Length | 92 |
| Max. P | 0.978212 |
| Location | 4,426,612 – 4,426,704 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 67.36 |
| Shannon entropy | 0.50316 |
| G+C content | 0.39097 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -7.94 |
| Energy contribution | -10.25 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.15 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4426612 92 - 21146708 UUUCAUUGCGGCCACUUUAACUGAUUUUCAUGAUCCAUGUAUCAGAAAAUACGUCAAGUAUAUCGAAGGCCGCACUCAAUUCGAAUUGUAUA--------- ......(((((((.......(((((...((((...)))).)))))...((((.....))))......)))))))..................--------- ( -24.00, z-score = -3.26, R) >droSim1.chr2R 3063487 92 - 19596830 UUUCAUUGCGGCCAUUUUAACUGAUUUUCAUGAUCCAUGAAUCAGAAAAUACGUCAAGUAUAACGAAGGCCGCACUCAAUUCGAAUUGUAUA--------- ......(((((((.......(((((..(((((...))))))))))...((((.....))))......)))))))..................--------- ( -24.60, z-score = -3.53, R) >droSec1.super_1 2068287 76 - 14215200 ------UGCGGCCAUUUU-----UUAUUCAUGAUCCAUGAAUCAGAAAAUACGUCAAGUAUAACGAAGGCCGCACUCGGCAC---UCGCA----------- ------((((((((((((-----(((((((((...))))))).))))))).(((........)))..)))))))....((..---..)).----------- ( -24.70, z-score = -3.86, R) >droYak2.chr2L 17081746 85 - 22324452 ---------------UUUACCUGCGGCCAAUUUUAC-UGAAUCAGAAAAUGAGUCAAGUAUAGUGAAGGUCGCACUCAAUUUGAAUUGUAUACCAGGUGCU ---------------..(((((((((((.(((.(((-(((.(((.....))).)).)))).)))...))))))...((((....))))......))))).. ( -21.80, z-score = -1.95, R) >consensus ______UGCGGCCAUUUUAACUGAUUUUCAUGAUCCAUGAAUCAGAAAAUACGUCAAGUAUAACGAAGGCCGCACUCAAUUCGAAUUGUAUA_________ ......(((((((.................((((......))))....((((.....))))......)))))))........................... ( -7.94 = -10.25 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:15 2011