| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,422,551 – 4,422,657 |
| Length | 106 |
| Max. P | 0.816977 |
| Location | 4,422,551 – 4,422,657 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Shannon entropy | 0.32971 |
| G+C content | 0.42018 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -20.20 |
| Energy contribution | -21.20 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.816977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4422551 106 + 21146708 AAUUGUUAGCAUGUAUGGCUAUAUAGGCCGUAUAAAUUCUAUUCCUAAUCCUCGC-------------AGGCAAUAAAUGGCGACAAACUACGAAUGUCUCCGGACAAAAUAGCUAUGG- ......((((.(((((((((.....)))))))))........(((....((....-------------.))........((.((((.........)))).))))).......))))...- ( -23.50, z-score = -0.84, R) >droEre2.scaffold_4929 8421834 99 - 26641161 AAUUGCCAGAAUAUAUGGC-AUAUAAGCCGUAUAAAUUCUGUUCCAGGCC-------------------GGCAACAAAUGGCGACAAAACACGAAUGCCUCUGGACCAAAUAGCUAUGG- ....(((((((((((((((-......))))))))..))))).((((((..-------------------((((.....((....)).........)))))))))).......)).....- ( -26.14, z-score = -1.72, R) >droYak2.chr2L 17077672 119 + 22324452 AAUCGCUGGAAUAUAUGGCUAUAUAAGCCAUAUAAUUUCUGUUCCUAAUCCUGGCCGACACACCAGGCCGGCAAUAAAUGGCGACAAACUACGAAUGCCUCCGGACAAAAUAGCUAUAG- ....(((((..(((((((((.....)))))))))...............(((((........)))))))))).....(((((.........((........)).........)))))..- ( -32.37, z-score = -2.52, R) >droSec1.super_1 2064464 120 + 14215200 AAUUGUUAGCAUGUAUGGCUAUAUGGGCCGUAUAAAUUUUGUUCCUAAUCCUGGCCGACAAACCAGGCAGGCAAUAAAUGGCGACAAACUACGAAUGUCUCCUGACAAAAUAGCUAUGGU ......((((.(((((((((.....))))))))).(((((((((((...(((((........))))).)))........((.((((.........)))).)).)))))))).)))).... ( -34.30, z-score = -1.90, R) >droSim1.chr2R 3059408 120 + 19596830 AAUUGUUAGCAUGUAUGGCUAUAUGAGCCGUAUAAAUUUUGUUCCUAAUCCUGGCCGACAAACCAGGCAGGCAAUAAAUGGCGACAAACUACGAAUGUCUCCGGACAAAAUAGCUAUGGU ......((((.(((((((((.....))))))))).(((((((((.....(((((........)))))............((.((((.........)))).))))))))))).)))).... ( -35.60, z-score = -2.53, R) >consensus AAUUGUUAGCAUGUAUGGCUAUAUAAGCCGUAUAAAUUCUGUUCCUAAUCCUGGCCGACA_ACCAGGCAGGCAAUAAAUGGCGACAAACUACGAAUGUCUCCGGACAAAAUAGCUAUGG_ ..((((((...(((((((((.....))))))))).....(((((((...(((((........))))).))).))))..))))))...........((((....))))............. (-20.20 = -21.20 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:14 2011