Locus 3329

Sequence ID dm3.chr2R
Location 4,418,529 – 4,418,646
Length 117
Max. P 0.506384
window4585

overview

Window 5

Location 4,418,529 – 4,418,646
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 72.61
Shannon entropy 0.39976
G+C content 0.32845
Mean single sequence MFE -20.43
Consensus MFE -10.36
Energy contribution -10.55
Covariance contribution 0.19
Combinations/Pair 1.19
Mean z-score -1.74
Structure conservation index 0.51
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.506384
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 4418529 117 - 21146708
UCAUAGUUUACGGCUUAAAUUCGUCAAUCCUUGGUAAUUGAUUAUUGCUUGAAAUUUAAGUCUGUAGAUCUUCCCUCCGGAAAAUUACGUCUUCUGCAUCGAGCCUUCAAUCAUUUA
.....((((..((((((((((..(((......((((((.....)))))))))))))))))))((((((..((((....))))..........))))))..))))............. ( -18.80, z-score =  -0.24, R)
>droSim1.chr2R 3052836 96 - 19596830
UCAUAAUUUACGGCUUAAAUUCGGCAAUCCUUAAUAAUUGAUUAUUGUUUGGAAUUUAAGUCUGU---------------------AGAUCUUUCCUCCGGAAAAUGUAAUCAUUUA
.....(((((((((((((((((((((((..(((.....)))..))))))..))))))))).))))---------------------)))).(((((...)))))............. ( -20.80, z-score =  -2.56, R)
>droSec1.super_1 2060402 95 - 14215200
UCAUAAUUUACGGCUUAAAUUCGGCAAUCCAUAAUAAUUGAUUAUUGUUU-GAAUUUAAGUCUGU---------------------AGCUCUUUCCUCCGGAAAAUGUAAUCAUUUA
........((((((((((((((((((((.((.......))...)))).))-))))))))).))))---------------------)((..(((((...)))))..))......... ( -20.00, z-score =  -2.85, R)
>droYak2.chr2L 17073551 95 - 22324452
UCAUAGUUUACGGCUUAAAUUCGACAAUCCUUGGUAAUUGAUUAUUGUUUGGAAUUUGAAUCCAU----------------------CGGGUUCGGCAUCGAGCCUUAAACCAUUUA
.....(((((.(((((((((((((((((..(..(...)..)..))))))..))))))((((((..----------------------.))))))......))))).)))))...... ( -22.10, z-score =  -1.31, R)
>consensus
UCAUAAUUUACGGCUUAAAUUCGGCAAUCCUUAAUAAUUGAUUAUUGUUUGGAAUUUAAGUCUGU_____________________ACGUCUUCCCCACCGAAAAUGUAAUCAUUUA
...........(((((((((((((((((..((((...))))..))))))..)))))))))))....................................................... (-10.36 = -10.55 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:13 2011