| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,418,158 – 4,418,250 |
| Length | 92 |
| Max. P | 0.936393 |
| Location | 4,418,158 – 4,418,250 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.01 |
| Shannon entropy | 0.58847 |
| G+C content | 0.37650 |
| Mean single sequence MFE | -20.76 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.74 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4418158 92 - 21146708 UUUCUUAAUAGCAUUUAUACCCACAUUGGCUUCUAUUAUUGUUACAACUUUUUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAA---------------------------- ..................((((((((..((((((....(((..(.......)..)))....)).)))).....))))))))...........---------------------------- ( -15.00, z-score = -0.84, R) >droSim1.chr2R 3052458 92 - 19596830 UUUCUUAAUAGCAUUUAGGCCCACAUUGGCUUCUUUUAUUGUUGAAACUUUCUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAA---------------------------- ................((((((((((..(((((((.(.(((..((.....))..))).).))).)))).....)))))))))).........---------------------------- ( -19.60, z-score = -1.08, R) >droSec1.super_1 2060026 92 - 14215200 UUUCUUAAUACCAUUUAGGCCCACAUUGGCUUCUGUUAUUGUUACAACUUUCUCUAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAA---------------------------- ................((((((((((...(((((((..(((((..............)))))))))).))...)))))))))).........---------------------------- ( -20.04, z-score = -1.65, R) >droYak2.chr2L 17073288 92 - 22324452 AUUCUUUAUAGUAUUUAUGCCCAUAUUGGCUUCUAAUAUCGUUAAAAUUUUUUUCAAUACGAGUAGGCCGAUUCUGUGGGUGUCCAUCCUAA---------------------------- ........(((.((..((((((((((((((..(((...((((................)))).)))))))))...))))))))..)).))).---------------------------- ( -20.99, z-score = -2.60, R) >droEre2.scaffold_4929 8417255 84 + 26641161 --------UUGCAUUUAGGCCCACAUUGGCUUCUGUUAUCGUCACCUCCUUCUCCGAGACGAUUAGGCAGAUUAUGUGGGUGUCCACAGUAA---------------------------- --------.(((....(.((((((((.....((((((((((((..............))))))..))))))..)))))))).).....))).---------------------------- ( -24.64, z-score = -1.74, R) >droAna3.scaffold_13266 18292240 119 + 19884421 UUUGUUAAUAACUUUUUUG-ACAUUUUUGCUCAAGAUCUUGACAGAAUCUAGACGGAAGGCGACCUCCAGAUUAUGUGGUUAGAUGUAUGUAGGGGGAUGUGUGAGUGUUUUCACAAAAA ((((((((......(((((-(((....)).))))))..)))))))).......(....)(((.(((((....(((((......)))))....))))).)))(((((....)))))..... ( -24.30, z-score = 0.48, R) >consensus UUUCUUAAUAGCAUUUAGGCCCACAUUGGCUUCUGUUAUUGUUACAACUUUCUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAA____________________________ ................((((((((((...((((((...(((((..............))))).)))).))...))))))))))..................................... (-11.90 = -12.74 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:12 2011