| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,407,190 – 4,407,297 |
| Length | 107 |
| Max. P | 0.525473 |
| Location | 4,407,190 – 4,407,297 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.93 |
| Shannon entropy | 0.30844 |
| G+C content | 0.36298 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.60 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4407190 107 + 21146708 --GGUAGUGAUGCAAGGCAACAAUUGAAUUCGAAGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAUA-------AACGAAAGAUAACAUCGAUUCAAUC---- --.(((....)))..(....).(((((((.(((.(.....................(((((.((((.....)))).)))))...-------..(....)....).)))))))))).---- ( -21.40, z-score = -1.19, R) >droSim1.chr2R 3041445 103 + 19596830 ------GUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACA-------AACGAAAGAUAACAACGAUUCAAUC---- ------.((.(((...))).))(((((((.((.((................((((.(((((.((((.....)))).))))).))-------))(....)....)).))))))))).---- ( -21.60, z-score = -1.59, R) >droSec1.super_1 2049059 107 + 14215200 --GGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACA-------AACGAAAGAUAACAAAGAUUCAAUC---- --.(((....)))..(....).(((((((((.(((.........))).)))((((.(((((.((((.....)))).))))).))-------))(....)..........)))))).---- ( -22.70, z-score = -1.76, R) >droYak2.chr2L 17062408 107 + 22324452 --GGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACA-------AAAGAAAGAUAACAUCGAUUCAAUC---- --.(((....)))..(....).(((((((.(((((...((.......))..((((.(((((.((((.....)))).))))).))-------))..........)))))))))))).---- ( -26.00, z-score = -2.62, R) >droEre2.scaffold_4929 8406513 107 - 26641161 --GGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACA-------AACGAAAGAUAACAUCGAUUCAAUC---- --.(((....)))..(....).(((((((.(((((................((((.(((((.((((.....)))).))))).))-------))(....)....)))))))))))).---- ( -28.30, z-score = -3.20, R) >droAna3.scaffold_13266 18281902 120 - 19884421 UAUGCUGAACUGCAACAUUUCGAAUGAAUUCAAAUGAGCUUGAACAAGGAACUUGCGUGUACAUUGGUAAGCAAUUUGCAUAGAGAAAAAAAACAGGAAAUAGUGUAGAAUCAAACCAAA .....(((.(((((..(((((.......(((((......))))).......(((..(((((.((((.....)))).))))).)))...........)))))..)))))..)))....... ( -20.10, z-score = 0.11, R) >consensus __GGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACA_______AACGAAAGAUAACAUCGAUUCAAUC____ ...........((..(....)....((((((.(((.........))).))))))))(((((.((((.....)))).)))))....................................... (-14.88 = -15.60 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:11 2011