| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,396,789 – 4,396,886 |
| Length | 97 |
| Max. P | 0.975047 |
| Location | 4,396,789 – 4,396,886 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 84.00 |
| Shannon entropy | 0.20827 |
| G+C content | 0.35552 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -19.81 |
| Energy contribution | -19.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.975047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4396789 97 - 21146708 GGUCUUCGGACUUAAAAAUACAUUUUAGCAUACUUUGAGGUAACUUUAAUGGUGUAUGGGAAACCUUGGUUUAUGAGAGAAGGUUAUGAAACCUAUG ((((....))))........(((...((((((((..(((....)))....)))))..((....))...))).))).....(((((....)))))... ( -20.40, z-score = -0.95, R) >droSec1.super_1 2038786 81 - 14215200 GGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA---------------- ((((....))))...((((.(((...((((((((..(((....)))....)))))..((....))...))).))).)))).---------------- ( -21.80, z-score = -2.56, R) >droSim1.chr2R 3031116 81 - 19596830 GGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA---------------- ((((....))))...((((.(((...((((((((..(((....)))....)))))..((....))...))).))).)))).---------------- ( -21.80, z-score = -2.56, R) >consensus GGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA________________ ((((....))))........(((...((((((((..(((....)))....)))))..((....))...))).)))...................... (-19.81 = -19.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:10 2011