| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,390,210 – 4,390,270 |
| Length | 60 |
| Max. P | 0.627611 |
| Location | 4,390,210 – 4,390,270 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Shannon entropy | 0.24134 |
| G+C content | 0.57424 |
| Mean single sequence MFE | -20.22 |
| Consensus MFE | -15.19 |
| Energy contribution | -16.25 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627611 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 4390210 60 - 21146708 GUUCCUGGGCGGUAAUCGCUGGAAAUCGGAGGGAUUCGGAGGGAAAGCCUCGUCUAGGAG ..((((((((.(.((((.((.........)).))))).((((.....)))))))))))). ( -20.90, z-score = -1.10, R) >droYak2.chr2L 17044331 55 - 22324452 GUUUCUGGGCGGGAACGGCAGGAAAACAAA-----UCGGAGGAAGAGCCACGUCUAGGAG ..(((((((((....)(((.(.....)...-----((.......)))))..)))))))). ( -14.20, z-score = -1.08, R) >droSec1.super_1 2032479 60 - 14215200 GUUCCUGGGCGGGAAUCGCAGGAAAUCGUAGGGAUUCGGAGGGAAAGCCUCGUCUAGGAG ..((((((((..(((((.((.(....).).).))))).((((.....)))))))))))). ( -24.10, z-score = -2.65, R) >droSim1.chr2R 3024776 60 - 19596830 GUUCCUGGGCGGGAAUCGCAGGAAAUCGUAGGGAUUCGAAGGGAAAGCCUCGUCUAGGAG ..(((((((((.(((((.((.(....).).).)))))..(((.....)))))))))))). ( -21.70, z-score = -1.94, R) >consensus GUUCCUGGGCGGGAAUCGCAGGAAAUCGUAGGGAUUCGGAGGGAAAGCCUCGUCUAGGAG ..(((((((((.(((((.(...........).)))))...((.....)).))))))))). (-15.19 = -16.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:09 2011