Locus 3324

Sequence ID dm3.chr2R
Location 4,390,088 – 4,390,141
Length 53
Max. P 0.783719
window4580

overview

Window 0

Location 4,390,088 – 4,390,141
Length 53
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 84.78
Shannon entropy 0.29735
G+C content 0.41195
Mean single sequence MFE -9.85
Consensus MFE -7.10
Energy contribution -6.80
Covariance contribution -0.30
Combinations/Pair 1.57
Mean z-score -1.78
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.68
SVM RNA-class probability 0.783719
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 4390088 53 - 21146708
AUAAACGCCGCUUGCAGUGCCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
......((.((.......)).)).............................. (  -4.50, z-score =   0.40, R)
>droSim1.chr2R 3023828 53 - 19596830
GUAAACGCCGCUCGCAGUGGCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
(((..((((((.....))))))..))).......................... ( -12.40, z-score =  -2.76, R)
>droSec1.super_1 2032353 53 - 14215200
AUAAACGCCGCUCGCAGUGGCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
.....((((((.....))))))............................... ( -10.00, z-score =  -1.80, R)
>droYak2.chr2L 17044205 53 - 22324452
UUAAACGCCGCUCGCAGUGGCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
.....((((((.....))))))............................... ( -10.00, z-score =  -1.86, R)
>droEre2.scaffold_4929 8390641 53 + 26641161
GUAAGCGCCGCUCGCAGUGGCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
(((.(((((((.....))))))).))).......................... ( -16.60, z-score =  -3.99, R)
>droAna3.scaffold_13266 18266185 53 + 19884421
AUAAAUAUUACCCACGGCAGCGAAUAAAAGUAUAUCAUUCGCCGAUAUCAAUC
..............((((...((((...........))))))))......... (  -5.60, z-score =  -0.65, R)
>consensus
AUAAACGCCGCUCGCAGUGGCGCAUACAAAUUUAUCUUUUAUCGACAUCAAUC
.....(((((((...)))))))............................... ( -7.10 =  -6.80 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:09 2011