| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,365,507 – 4,365,597 |
| Length | 90 |
| Max. P | 0.688796 |
| Location | 4,365,507 – 4,365,597 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.45 |
| Shannon entropy | 0.47660 |
| G+C content | 0.53955 |
| Mean single sequence MFE | -31.85 |
| Consensus MFE | -16.21 |
| Energy contribution | -17.68 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4365507 90 + 21146708 ----------UACGGUGCGGUUCGUGUGCUUGUGCACACUGUA---UUUGCCGUGUGCGCA-GUACAGUGUUCCUUCCUCGUCGCAAACCAACCGUGCAUUAGG ----------....(..(((((.(((((((.((((((((.((.---...)).)))))))))-)))).(((............)))..)).)))))..)...... ( -33.70, z-score = -2.18, R) >droSim1.chr2R 3008265 86 + 19596830 ----------UACGGUGCGGUUCGUGUGCUUGUGCACACUGUA---UUUGCCGUGUGCGCA-GUACAGUGUUC-UUCCUCGUCGCAAAC-AACCGUGCAUAG-- ----------....(..(((((.(((((((.((((((((.((.---...)).)))))))))-)))).(((...-........)))..))-)))))..)....-- ( -33.20, z-score = -2.25, R) >droSec1.super_1 2007486 90 + 14215200 ----------UACGAUGCGGUUCGUGUGCUUGUGCACACUGUA---UUUGCCGUGUGCGCA-GUACAGUGUUCCUUCCUCGUCGCAAACCAACCGUGCAUUAGG ----------...(((((((((.(((((((.((((((((.((.---...)).)))))))))-)))).(((............)))..)).))))..)))))... ( -30.30, z-score = -1.48, R) >droYak2.chr2L 17020085 93 + 22324452 ----------UACGGUGCGGUUCGUGUGCUUGUGCUCACUGUACUCUUUGCCGUGUGCGCA-UUACAGUGUGCCUUCCCCGGCACCAACCAACCGUGCAUUAGG ----------....(..(((((.(((((..(((((.(((.(((.....))).))).)))))-.))).(.(((((......)))))).)).)))))..)...... ( -34.60, z-score = -1.95, R) >droEre2.scaffold_4929 8367826 79 - 26641161 ----------CACGGUGCGGUUCGUGUGCUUGUGCUCACUGUA---CUUGCCGCGUACGCA-UUACAGUGUGCCCUCCU-----------AACCGUGCAUUAGG ----------....(..(((((.(((.((..((((.....)))---)..)))))((((((.-.....))))))......-----------)))))..)...... ( -28.70, z-score = -1.49, R) >droAna3.scaffold_13266 18245070 101 - 19884421 UACAAACAAAUAGUAUGUGGAUAGCAUGGGUGUGUG---UGUACAUACGGGCGGGUAUUUAUGUGCAGCGCGCCUUCCAUGUCGGCAACUAACCGUGCAUUAGG ..........((((.(((.((((....((((((((.---((((((((.(........).))))))))))))))))....)))).))))))).((........)) ( -30.60, z-score = 0.10, R) >consensus __________UACGGUGCGGUUCGUGUGCUUGUGCACACUGUA___UUUGCCGUGUGCGCA_GUACAGUGUGCCUUCCUCGUCGCAAACCAACCGUGCAUUAGG ..............((((((((.(((....(((((((((.(((.....))).)))))))))..))).(((............))).....))))))))...... (-16.21 = -17.68 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:05 2011