| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,314,975 – 4,315,038 |
| Length | 63 |
| Max. P | 0.781283 |
| Location | 4,314,975 – 4,315,038 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 65.62 |
| Shannon entropy | 0.61524 |
| G+C content | 0.42546 |
| Mean single sequence MFE | -12.83 |
| Consensus MFE | -8.54 |
| Energy contribution | -7.91 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4314975 63 + 21146708 AAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUA--------CAGGCAACGC------ ......(((..((...((((.....(((((.......))))).....)))).)--------)..)))....------ ( -11.90, z-score = -0.46, R) >dp4.chr3 2291884 77 + 19779522 AGACAGUGUUCGUUCUGGGCAAUUAGUCAGAGAAAAGUUGACAAGACGCUUAGGGGACUACUUAUAUAUGCGACGGA ....((((.((.((((((((.....(((((.......))))).....)))))))))).))))............... ( -14.50, z-score = 0.39, R) >droAna3.scaffold_13266 18195575 53 - 19884421 AGAGACUGUUCGUUCUGGGCAAUUAGUCAGGAAAAAGCUGACAGAAAAUUUAA------------------------ .....(((((.(((((.(((.....))).)))....)).))))).........------------------------ ( -9.40, z-score = -0.31, R) >droEre2.scaffold_4929 8317507 68 - 26641161 AGAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUG---GCAUGCAGGCAACGC------ .....((((..(((..((((.....(((((.......))))).....)))).)---))..)))).......------ ( -14.20, z-score = 0.43, R) >droYak2.chr2L 16966906 50 + 22324452 AGGAACUGCUCGUUCCAGGCAAUUAGUCGAGAAAAAGUUGACAAGUUGGC--------------------------- .(((((.....))))).(.(((((.(((((.......))))).))))).)--------------------------- ( -14.30, z-score = -2.08, R) >droSec1.super_1 1955175 50 + 14215200 AAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGGCAACAGAAA--------------------------- .......(((..((((.(((.....))).))))..)))((....))....--------------------------- ( -9.40, z-score = -0.96, R) >droSim1.chr2R 2933524 71 + 19596830 AAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUGCAGGCAUGCAGGCAACGC------ ......(((((.....)))))....(((((.......))))).....((((.(((....))))))).....------ ( -16.10, z-score = 0.04, R) >consensus AGAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUG______________A_GC______ ......(((((.....)))))....(((((.......)))))................................... ( -8.54 = -7.91 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:01 2011