| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,298,126 – 4,298,240 |
| Length | 114 |
| Max. P | 0.979677 |
| Location | 4,298,126 – 4,298,240 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.75 |
| Shannon entropy | 0.19964 |
| G+C content | 0.43864 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -29.92 |
| Energy contribution | -30.20 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4298126 114 + 21146708 GUCAAGGUGGAAGCCAAUGAAAUACACAUGUGGUUAAUUACGGCCGAAGGAACUGGCUCGUAUCCUGCUGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGGCCUUCAUUCUUCC------ ...((((((((.((((((((.((.(.(((.((((((((((..((((.((((((......)).))))..)))).))))))))))...)))).)).)))))))).)))).))))..------ ( -35.80, z-score = -3.11, R) >droSim1.chr2R_random 1426791 114 + 2996586 GUCAAGGUGGAAGCCAAUGAAAUACACAUGUGGUUAAUUACGGCCGAAGGAACUGGCUCGUAUCCUGCUGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGGCCUUCAUUCUUCC------ ...((((((((.((((((((.((.(.(((.((((((((((..((((.((((((......)).))))..)))).))))))))))...)))).)).)))))))).)))).))))..------ ( -35.80, z-score = -3.11, R) >droSec1.super_1 1939145 114 + 14215200 GUCAAGGUGGAAGCCAAUGAAAUACACAUGUGGUUAAUUACGGCCGAAGGAACUGGCUCGUAUCCUGCUGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGGCCUUCAUUCUUCC------ ...((((((((.((((((((.((.(.(((.((((((((((..((((.((((((......)).))))..)))).))))))))))...)))).)).)))))))).)))).))))..------ ( -35.80, z-score = -3.11, R) >droYak2.chr2L 16950409 120 + 22324452 GUCAAGGUGGAAGCCAAUGGAAUACACAUGUGGUUAAUUACGGCCGAAGGAGCUGGCUCGCAUCCUGCAGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGCUCUUUUUUCCCGUUCUUGC ..(((((.((((((.((((..((.(.(((.((((((((((..(((..((((((......)).))))...))).))))))))))...)))).))..)))))))......)))...))))). ( -32.40, z-score = -0.63, R) >droEre2.scaffold_4929 8300923 108 - 26641161 GUCAAGGUGGAAGCCAAUGGAAUACGCAUGUGGUAAAUUACGGCCGAAGGAGCUGG-----AUCCUGCUGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGUCCUCCAGCUUGA------- .(((((.((((.(.(((((..((.(.(((.((((.(((((..((((.((((.....-----.))))..)))).))))).))))...)))).))..))))).).)))).)))))------- ( -34.70, z-score = -2.29, R) >consensus GUCAAGGUGGAAGCCAAUGAAAUACACAUGUGGUUAAUUACGGCCGAAGGAACUGGCUCGUAUCCUGCUGGCAUAAUUAAUUAAAAAUGGAAUCUCGUUGGCCUUCAUUCUUCC______ .....((((((.((((((((.((.(.(((.((((((((((..(((..((((((......)).))))...))).))))))))))...)))).)).)))))))).))))))........... (-29.92 = -30.20 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:08:00 2011