| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,297,654 – 4,297,723 |
| Length | 69 |
| Max. P | 0.853742 |
| Location | 4,297,654 – 4,297,723 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 92.51 |
| Shannon entropy | 0.12031 |
| G+C content | 0.34783 |
| Mean single sequence MFE | -10.90 |
| Consensus MFE | -10.36 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4297654 69 - 21146708 AAGCAAAUAAAACUAAAUAAUUGCAUUCCGCAGUAAUUGGAAUAUAGAACAACAGCCGGUUUUGAGAAA ..((((.((........)).))))((((((.(....))))))).((((((........))))))..... ( -9.10, z-score = -0.51, R) >droSim1.chr2R_random 1426316 69 - 2996586 AAGCAGAUAAAACUAAAUAACUGCAUUCCGCAGUAAUUGGAAUAUAGAACAACAGCCGGUUCUCAGAAA ..((((.((........)).))))((((((.(....)))))))..(((((........)))))...... ( -11.70, z-score = -1.44, R) >droSec1.super_1 1938671 69 - 14215200 AAGCAGAUAAAACUAAAUAACUGCAUUCCGCAGUAAUUGGAAUAUAGAACAACAGCCGGUUCUCAGAAA ..((((.((........)).))))((((((.(....)))))))..(((((........)))))...... ( -11.70, z-score = -1.44, R) >droYak2.chr2L 16949964 69 - 22324452 AAGCCAAUCAAACUAAAUAACUGCAUUUCGCAGUAAUUAGAAUAUAGAACAACAGCCGGUUCUCCAAAA ............((((...(((((.....)))))..)))).....(((((........)))))...... ( -11.10, z-score = -2.48, R) >consensus AAGCAAAUAAAACUAAAUAACUGCAUUCCGCAGUAAUUGGAAUAUAGAACAACAGCCGGUUCUCAGAAA ............((((...(((((.....)))))..)))).....(((((........)))))...... (-10.36 = -9.80 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:59 2011