| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,275,364 – 4,275,458 |
| Length | 94 |
| Max. P | 0.604485 |
| Location | 4,275,364 – 4,275,458 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 74.70 |
| Shannon entropy | 0.51499 |
| G+C content | 0.59825 |
| Mean single sequence MFE | -35.60 |
| Consensus MFE | -18.58 |
| Energy contribution | -18.40 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4275364 94 - 21146708 GUGGGAGUGGGAGUGCGAAGGGGGCGGCGGCGAAAGGAGGGCAUGGCCGUCCGUGAUCUCCAUUUCAUCGUCGUUAUUGUUGCUCCGACUGCUG ..((.(((.(((((((((....(((((((..((((((((..(((((....)))))..)))).))))..))))))).))).)))))).))).)). ( -43.30, z-score = -2.94, R) >droSim1.chr2R 2916274 94 - 19596830 GUGGGAGUGCGAGUGCGAAGGGGGCGGCGGCGAAAGGAGGGCGUGGCCGUCCGUGAUCUCCAUUUCAUCGUCGUUGUUGUUGCUCCGACUGCUG ..((.(((.((.(.((((..(.(((((((..((((((((..(((((....)))))..)))).))))..))))))).)..)))).)))))).)). ( -37.90, z-score = -0.71, R) >droSec1.super_1 1921201 94 - 14215200 GUGGGAGUGCGAGUGCGAAGGGGGCGGCGGCGAAAGGAGGGCGUGGCCGUCCGUGAUCUCCAUUUCAUCGUCGUUGUUGUUGCUCCGACUGCUG ..((.(((.((.(.((((..(.(((((((..((((((((..(((((....)))))..)))).))))..))))))).)..)))).)))))).)). ( -37.90, z-score = -0.71, R) >droYak2.chr2L 16931754 88 - 22324452 ------GUGGGAGUGCGAAGGGGGCGGUGGCGAGAGGAGGGCGUGGCCGUCUGUGAUCUCCAUUUCAUCGUCGUUGUUGUUGCUCCGACUGUUG ------((.(((((((((..(.((((((((.((((...(((((....)))))....))))....)))))))).)..))).)))))).))..... ( -34.10, z-score = -1.35, R) >droEre2.scaffold_4929 8283565 94 + 26641161 GUGGGAGUGCGAGUGCGAAGGCGGCGGGGGCGAGAGCAGGGCGUGGCCGUCUGUGAUCUCCAUUUCAUCGUCGUUGUUGUUGCUCCGACUGCUG ((.(((((((((..(((((((((((.(.(((....))....).).)))))))((((........))))..))))..))).)))))).))..... ( -34.10, z-score = 0.65, R) >droAna3.scaffold_13266 18162783 90 + 19884421 GUGGGAAUGGGAGUGGGAGGGCGGCGGUGGUGAUAGGAGGGCGUGGCCGUCCGUGGUCUCCAUUUCAUCGUCACGGUUGCUGUUCCGACC---- ........((...(((((.((((((.(((..(((.(((.(((...))).)))((((...))))...)))..))).)))))).))))).))---- ( -38.00, z-score = -1.65, R) >droWil1.scaffold_180701 707510 88 - 3904529 ------AUGUGAAUGCGGCGGCGAUAAUAAAGUGUGAUCCACCUCAAUGGAGGACACUUCCAUGUUGUCAUCUUCGUUGCUAAUAUUAUUAUUA ------........(((((((.(((((((((((((..((((......))))..))))))...)))))))....))))))).............. ( -23.90, z-score = -1.79, R) >consensus GUGGGAGUGCGAGUGCGAAGGGGGCGGCGGCGAAAGGAGGGCGUGGCCGUCCGUGAUCUCCAUUUCAUCGUCGUUGUUGUUGCUCCGACUGCUG ...((((((.(((......(.(((((((.(((.........))).))))))).)...))))))))).(((..((.......))..)))...... (-18.58 = -18.40 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:58 2011