| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,263,057 – 4,263,147 |
| Length | 90 |
| Max. P | 0.545757 |
| Location | 4,263,057 – 4,263,147 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Shannon entropy | 0.33921 |
| G+C content | 0.31204 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -8.95 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4263057 90 - 21146708 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCG-A--AAUUUUGAAAGGCCAU----UGCCUUGGCCACAA---CCCACA------ ---------..(((((......)))))(((..((((((((...(..(((((....))))-)..-)--..))))))))(((((.----.....)))))....---..))).------ ( -18.80, z-score = -2.57, R) >droSim1.chr2R 2898712 90 - 19596830 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCG-A--AAUUUUGAAAGGCCAU----UGCCUUGGCCACAA---CCCACA------ ---------..(((((......)))))(((..((((((((...(..(((((....))))-)..-)--..))))))))(((((.----.....)))))....---..))).------ ( -18.80, z-score = -2.57, R) >droSec1.super_1 1908820 90 - 14215200 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCG-A--AAUUUUGAAAGGCCAU----UGCCUUGGCCACAA---CCCACA------ ---------..(((((......)))))(((..((((((((...(..(((((....))))-)..-)--..))))))))(((((.----.....)))))....---..))).------ ( -18.80, z-score = -2.57, R) >droYak2.chr2L 16919583 90 - 22324452 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAUAU-UCG-A--AAUUUUGAAAGGCCAU----UGCCUUGGCCACAA---CCCACA------ ---------..(((((......)))))(((..((((((((...(..(((........))-)..-)--..))))))))(((((.----.....)))))....---..))).------ ( -17.30, z-score = -2.07, R) >droEre2.scaffold_4929 8271674 90 + 26641161 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAUAU-UCG-A--AAUUUUGAAAGGCCAU----UGCCUUGGCCACAG---CCCACA------ ---------..(((((......)))))(((..((((((((...(..(((........))-)..-)--..))))))))(((((.----.....)))))....---..))).------ ( -17.30, z-score = -1.87, R) >droAna3.scaffold_13266 18151923 91 + 19884421 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAGGA---CUGACA------ ---------...........(((((.......((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....)))))..))---)))...------ ( -21.60, z-score = -2.71, R) >dp4.chr3 2241178 100 - 19779522 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAGAAAACUUCACACACACA ---------..(((((......)))))((((.((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....)))))..........))))..... ( -20.90, z-score = -2.73, R) >droPer1.super_2 2413600 100 - 9036312 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAGAAAACUUCACACAAACA ---------..(((((......)))))((((.((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....)))))..........))))..... ( -20.90, z-score = -2.74, R) >droWil1.scaffold_180701 692147 91 - 3904529 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAAAAAGCUUA--------- ---------...............(((((...((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....))))).....)))))--------- ( -18.70, z-score = -2.09, R) >droVir3.scaffold_12875 11304278 91 + 20611582 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAAAU---CCUACA------ ---------..(((((......))))).((((((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....)))))....---..))))------ ( -17.50, z-score = -2.10, R) >droMoj3.scaffold_6496 9042999 106 + 26866924 AGUCUAAGCUCUUAACCCU-UACCCGAGGCAAUUUCAAUAAAAUUCGGCUCUAGUCUGCGACGGACUAAACCCAAAAAGCAGUCAAAUGUCUCAGACACAA---ACCACA------ ...................-.....(((.((((((.....))))).).)))..(((((.(((.((((.............))))....))).)))))....---......------ ( -18.12, z-score = -0.91, R) >droGri2.scaffold_15245 15719911 91 + 18325388 ---------AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU-UCGAA--AAUUUUGAAAGGCCAU----UGCCUUGGCCAAAU---CCUACA------ ---------..(((((......))))).((((((((((((...(..(((((....))))-)..).--..))))))))(((((.----.....)))))....---..))))------ ( -17.50, z-score = -2.10, R) >consensus _________AAUUAAUUUUACAGUUAAGUGUAUUUCAAGAAAGUUAAAUUUACGUAAAU_UCGAA__AAUUUUGAAAGGCCAU____UGCCUUGGCCACAA___CCCACA______ ...........................(((..((((((((.............................))))))))(((((..........))))).........)))....... ( -8.95 = -9.87 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:53 2011