| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,331,212 – 2,331,302 |
| Length | 90 |
| Max. P | 0.596296 |
| Location | 2,331,212 – 2,331,302 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 88.95 |
| Shannon entropy | 0.19298 |
| G+C content | 0.51659 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -18.08 |
| Energy contribution | -18.72 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2331212 90 - 23011544 GUUUUCGCGCUGCCAUGAAGCCAAGCGGGAAAACCCCUACCCCCAUU-----UUUCCCUGCACUUUUCACUUGCUGCCUGCAAUGAUUGCAUAAA ((((((.((((((......))..)))).)))))).............-----......((((....(((.((((.....))))))).)))).... ( -21.80, z-score = -2.14, R) >droSim1.chr2L 2288657 90 - 22036055 GUUUUCGCGCUGCCACGAAGCCAAGCGGGAAAAACCCCUUCCCCCC-----AUUUCCCUGCACUUUUCACUUGCUGCCUGCAAUGAUUGCAUAAA .(((((.((((((......))..)))).))))).............-----.......((((....(((.((((.....))))))).)))).... ( -19.30, z-score = -1.19, R) >droSec1.super_5 502831 90 - 5866729 GUUUUCGCGCUGCCACGAAGCCAAGCGGGAAAAACCCCUACGCCCC-----AUUUCCCUGCACUUUUCACUUGCUGCCUGCAAUGAUUGCAUAAA .(((((.((((((......))..)))).))))).............-----.......((((....(((.((((.....))))))).)))).... ( -19.30, z-score = -0.60, R) >droYak2.chr2L 2310674 95 - 22324452 GUUUUCGCGCUGCCAUAAAGCCAAGCGGGAAAACCCCCACCCCCUUUCCCCAUUUUCCUGCACUUUUCACUCGCUGCCUGCAAUGAUUGCAUAAA ((((((.((((((......))..)))).))))))........................((((....(((...((.....))..))).)))).... ( -18.50, z-score = -1.30, R) >droEre2.scaffold_4929 2370212 88 - 26641161 GUUUUCGCGCUGCCAUGAAGCCAAGCGGGAAAGCCCCUACCCCC-------AUUUCCCUGCACUUUUCACUUGGUGCCAGCAAUGAUUGCAUAAA ((((((.((((((......))..)))).))))))..........-------........(((((........)))))..(((.....)))..... ( -21.30, z-score = -0.49, R) >consensus GUUUUCGCGCUGCCAUGAAGCCAAGCGGGAAAACCCCCACCCCCCC_____AUUUCCCUGCACUUUUCACUUGCUGCCUGCAAUGAUUGCAUAAA ((((((.((((((......))..)))).))))))........................((((....(((.((((.....))))))).)))).... (-18.08 = -18.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:55 2011