| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,255,518 – 4,255,617 |
| Length | 99 |
| Max. P | 0.941232 |
| Location | 4,255,518 – 4,255,617 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.23863 |
| G+C content | 0.40856 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.63 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4255518 99 - 21146708 UCCGAAAACCACAUGGGUAUUCGACAGAUCGAGUAGGCAAACCGUCGACAAUCACCAAAAACCAUGUGCGUAUUUGAAAGAUCGAAUUUUAAAUCUAUC ..((((.(((((((((.(((((((....)))))))(((.....)))...............))))))).)).))))....................... ( -22.40, z-score = -1.75, R) >droSec1.super_1 1901380 92 - 14215200 UCCGAUAACCAUAUGGGUAUUUGACAGAUCGAGUAGGCUAU-AGCC------UAUCGAAUGCCGUGUGCGUAUUUGAAAGAUCGCAUAAUAAAGCUAUC ...((((........(((((((((.........(((((...-.)))------))))))))))).((((((...((....)).)))))).......)))) ( -24.20, z-score = -1.70, R) >droSim1.chr2R_random 1396871 93 - 2996586 UCCGAAAACCAUAUGGGUAUUUGACAGAUAGAGUAGGCUAUCCGCC------UACCGAAUACCAUGUGCGUAUUUGAAAGAUCGCAUAAUAAACCUAUC ..((((.(((.....))).))))...(((((.((((((.....)))------))).........((((((...((....)).))))))......))))) ( -25.00, z-score = -3.23, R) >consensus UCCGAAAACCAUAUGGGUAUUUGACAGAUCGAGUAGGCUAUCCGCC______UACCGAAUACCAUGUGCGUAUUUGAAAGAUCGCAUAAUAAACCUAUC ..((((.(((((((((.(((((((....)))))))(((.....)))...............))))))).)).))))....................... (-18.85 = -18.63 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:51 2011