| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,252,805 – 4,252,863 |
| Length | 58 |
| Max. P | 0.852236 |
| Location | 4,252,805 – 4,252,863 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 92.76 |
| Shannon entropy | 0.13011 |
| G+C content | 0.37368 |
| Mean single sequence MFE | -15.42 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4252805 58 + 21146708 UUUUUGAAUAUCUAAUUUAGAGAGGCGUUAGCCGAAAGGGUGAAGUUCGAAAUUUGAA .((((((((.((((...))))......(((.((....)).))).))))))))...... ( -12.30, z-score = -1.56, R) >droEre2.scaffold_4929 8260834 58 - 26641161 UUUUUGAAUAUCAAAUUUAGAGAGGCGCUUGCCGAAAAGGUGCGGUUCGAAAUUUUAA ..(((((((.....)))))))(((.(((..(((.....)))))).))).......... ( -12.40, z-score = -0.83, R) >droYak2.chr2L 16908857 57 + 22324452 UUUUUGAAUAUCAAAUUUAGAGAGGCGUUUGCCGAAAAGGUGCG-CUCGAAAUUUGAA ..........((((((((...(((.(((..(((.....))))))-))).)))))))). ( -16.20, z-score = -2.41, R) >droSec1.super_1 1898823 58 + 14215200 UUUUUGAAUAUCAAAUUUAGAGAGGCGUUGGCCGAAAGGGUGCGGUUCGAAAUUUGAA ..........((((((((...(((.(((...((....))..))).))).)))))))). ( -18.10, z-score = -3.28, R) >droSim1.chr2R_random 1394117 58 + 2996586 UUUUUGAAUAUCAAAUUUAGAGAGGCGUUGGCCGAAAGGGUGCGGUUCGAAAUUUGAA ..........((((((((...(((.(((...((....))..))).))).)))))))). ( -18.10, z-score = -3.28, R) >consensus UUUUUGAAUAUCAAAUUUAGAGAGGCGUUGGCCGAAAGGGUGCGGUUCGAAAUUUGAA ..........((((((((...(((.(((..(((.....)))))).))).)))))))). (-12.40 = -12.88 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:50 2011