| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,248,507 – 4,248,603 |
| Length | 96 |
| Max. P | 0.678434 |
| Location | 4,248,507 – 4,248,603 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Shannon entropy | 0.19826 |
| G+C content | 0.42869 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -20.89 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4248507 96 + 21146708 CUCAACUGACAGAUUUUCAGUUGGGUUGCUGGGAUGGGGAUUCCACAGGGAUACCCAACACCACCAGAAAUCAUAAAUAUAAAAAGAGUUUAUAAA (((((((((.......)))))))))(((.((((.((((.(((((...))))).)))).).))).)))..........((((((.....)))))).. ( -26.10, z-score = -1.96, R) >droSec1.super_1 1894529 82 + 14215200 UUCAACUGACAGAUUUUCCGUUGGGUUGCUGGGAUGGGGAUUCCACAGGGACACCCAUUACCACCAGAAAUCAUAAAUACAA-------------- ..((((.((.......)).))))((((.((((((((((..((((...))))..))))))....)))).))))..........-------------- ( -22.30, z-score = -0.95, R) >droSim1.chr2R_random 1384930 82 + 2996586 UUCAACUGACAGAUUUUCCGUUGGGUUGCUGGGAUGGGGAUUCCACAGGGACACCCAUUACCACCAGAAAUCAUAAAUAAAA-------------- ..((((.((.......)).))))((((.((((((((((..((((...))))..))))))....)))).))))..........-------------- ( -22.30, z-score = -0.94, R) >consensus UUCAACUGACAGAUUUUCCGUUGGGUUGCUGGGAUGGGGAUUCCACAGGGACACCCAUUACCACCAGAAAUCAUAAAUAAAA______________ ..((((.((.......)).))))((((.((((((((((...(((....)))..))))))....)))).))))........................ (-20.89 = -21.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:47 2011