| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,243,777 – 4,243,829 |
| Length | 52 |
| Max. P | 0.542452 |
| Location | 4,243,777 – 4,243,829 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 97.44 |
| Shannon entropy | 0.03532 |
| G+C content | 0.38462 |
| Mean single sequence MFE | -5.83 |
| Consensus MFE | -5.83 |
| Energy contribution | -5.83 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.80 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4243777 52 + 21146708 UAAUGCUGCGUGUAUUUCCCCUCCUUUUUUCUUUCUUAAUGCGGUUUACGAA ....(((((((...........................)))))))....... ( -5.83, z-score = -1.02, R) >droSim1.chr2R_random 1371287 52 + 2996586 UAAUGCUGCGUGUUUUUCCCCACCUUUUUUCUUUCUUAAUGCGGUUUACGAA ....(((((((...........................)))))))....... ( -5.83, z-score = -0.69, R) >droSec1.super_1 1889826 52 + 14215200 UAAUGCUGCGUGUUUUUCCCCACCUUUUUUCUUUCUUAAUGCGGUUUACGAA ....(((((((...........................)))))))....... ( -5.83, z-score = -0.69, R) >consensus UAAUGCUGCGUGUUUUUCCCCACCUUUUUUCUUUCUUAAUGCGGUUUACGAA ....(((((((...........................)))))))....... ( -5.83 = -5.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:45 2011